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- <?php
- /* Copyright (C) 2008 Guy Van den Broeck <guy@guyvdb.eu>
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
- * or see http://www.gnu.org/
- */
- /**
- * This diff implementation is mainly lifted from the LCS algorithm of the Eclipse project which
- * in turn is based on Myers' "An O(ND) difference algorithm and its variations"
- * (http://citeseer.ist.psu.edu/myers86ond.html) with range compression (see Wu et al.'s
- * "An O(NP) Sequence Comparison Algorithm").
- *
- * This implementation supports an upper bound on the excution time.
- *
- * Complexity: O((M + N)D) worst case time, O(M + N + D^2) expected time, O(M + N) space
- *
- * @author Guy Van den Broeck
- * @ingroup DifferenceEngine
- */
- class WikiDiff3 {
- //Input variables
- private $from;
- private $to;
- private $m;
- private $n;
- private $tooLong;
- private $powLimit;
- //State variables
- private $maxDifferences;
- private $lcsLengthCorrectedForHeuristic = false;
- //Output variables
- public $length;
- public $removed;
- public $added;
- public $heuristicUsed;
- function __construct($tooLong = 2000000, $powLimit = 1.45){
- $this->tooLong = $tooLong;
- $this->powLimit = $powLimit;
- }
- public function diff(/*array*/ $from, /*array*/ $to){
- //remember initial lengths
- $m = sizeof($from);
- $n = count($to);
- $this->heuristicUsed = false;
- //output
- $removed = $m > 0 ? array_fill(0, $m, true) : array();
- $added = $n > 0 ? array_fill(0, $n, true) : array();
- //reduce the complexity for the next step (intentionally done twice)
- //remove common tokens at the start
- $i = 0;
- while($i < $m && $i < $n && $from[$i] === $to[$i]) {
- $removed[$i] = $added[$i] = false;
- unset($from[$i], $to[$i]);
- ++$i;
- }
- //remove common tokens at the end
- $j = 1;
- while($i + $j <= $m && $i + $j <= $n && $from[$m - $j] === $to[$n - $j]) {
- $removed[$m - $j] = $added[$n - $j] = false;
- unset($from[$m - $j], $to[$n - $j]);
- ++$j;
- }
- $this->from = $newFromIndex = $this->to = $newToIndex = array();
- //remove tokens not in both sequences
- $shared = array();
- foreach( $from as $key ) {
- $shared[$key] = false;
- }
- foreach($to as $index => &$el) {
- if(array_key_exists($el, $shared)) {
- //keep it
- $this->to[] = $el;
- $shared[$el] = true;
- $newToIndex[] = $index;
- }
- }
- foreach($from as $index => &$el) {
- if($shared[$el]) {
- //keep it
- $this->from[] = $el;
- $newFromIndex[] = $index;
- }
- }
- unset($shared, $from, $to);
- $this->m = count($this->from);
- $this->n = count($this->to);
- $this->removed = $this->m > 0 ? array_fill(0, $this->m, true) : array();
- $this->added = $this->n > 0 ? array_fill(0, $this->n, true) : array();
- if ($this->m == 0 || $this->n == 0) {
- $this->length = 0;
- } else {
- $this->maxDifferences = ceil(($this->m + $this->n) / 2.0);
- if ($this->m * $this->n > $this->tooLong) {
- // limit complexity to D^POW_LIMIT for long sequences
- $this->maxDifferences = floor(pow($this->maxDifferences, $this->powLimit - 1.0));
- wfDebug("Limiting max number of differences to $this->maxDifferences\n");
- }
- /*
- * The common prefixes and suffixes are always part of some LCS, include
- * them now to reduce our search space
- */
- $max = min($this->m, $this->n);
- for ($forwardBound = 0; $forwardBound < $max
- && $this->from[$forwardBound] === $this->to[$forwardBound];
- ++$forwardBound) {
- $this->removed[$forwardBound] = $this->added[$forwardBound] = false;
- }
- $backBoundL1 = $this->m - 1;
- $backBoundL2 = $this->n - 1;
- while ($backBoundL1 >= $forwardBound && $backBoundL2 >= $forwardBound
- && $this->from[$backBoundL1] === $this->to[$backBoundL2]) {
- $this->removed[$backBoundL1--] = $this->added[$backBoundL2--] = false;
- }
- $temp = array_fill(0, $this->m + $this->n + 1, 0);
- $V = array($temp, $temp);
- $snake = array(0, 0, 0);
- $this->length = $forwardBound + $this->m - $backBoundL1 - 1
- + $this->lcs_rec($forwardBound, $backBoundL1,
- $forwardBound, $backBoundL2, $V, $snake);
- }
- $this->m = $m;
- $this->n = $n;
- $this->length += $i + $j - 1;
- foreach($this->removed as $key => &$removed_elem) {
- if(!$removed_elem) {
- $removed[$newFromIndex[$key]] = false;
- }
- }
- foreach($this->added as $key => &$added_elem) {
- if(!$added_elem) {
- $added[$newToIndex[$key]] = false;
- }
- }
- $this->removed = $removed;
- $this->added = $added;
- }
- function diff_range($from_lines, $to_lines) {
- // Diff and store locally
- $this->diff($from_lines, $to_lines);
- unset($from_lines, $to_lines);
- $ranges = array();
- $xi = $yi = 0;
- while ($xi < $this->m || $yi < $this->n) {
- // Matching "snake".
- while ($xi < $this->m && $yi < $this->n
- && !$this->removed[$xi]
- && !$this->added[$yi]) {
- ++$xi;
- ++$yi;
- }
- // Find deletes & adds.
- $xstart = $xi;
- while ($xi < $this->m && $this->removed[$xi]) {
- ++$xi;
- }
- $ystart = $yi;
- while ($yi < $this->n && $this->added[$yi]) {
- ++$yi;
- }
- if ($xi > $xstart || $yi > $ystart) {
- $ranges[] = new RangeDifference($xstart, $xi,
- $ystart, $yi);
- }
- }
- return $ranges;
- }
- private function lcs_rec($bottoml1, $topl1, $bottoml2, $topl2, &$V, &$snake) {
- // check that both sequences are non-empty
- if ($bottoml1 > $topl1 || $bottoml2 > $topl2) {
- return 0;
- }
- $d = $this->find_middle_snake($bottoml1, $topl1, $bottoml2,
- $topl2, $V, $snake);
- // need to store these so we don't lose them when they're
- // overwritten by the recursion
- $len = $snake[2];
- $startx = $snake[0];
- $starty = $snake[1];
- // the middle snake is part of the LCS, store it
- for ($i = 0; $i < $len; ++$i) {
- $this->removed[$startx + $i] = $this->added[$starty + $i] = false;
- }
- if ($d > 1) {
- return $len
- + $this->lcs_rec($bottoml1, $startx - 1, $bottoml2,
- $starty - 1, $V, $snake)
- + $this->lcs_rec($startx + $len, $topl1, $starty + $len,
- $topl2, $V, $snake);
- } else if ($d == 1) {
- /*
- * In this case the sequences differ by exactly 1 line. We have
- * already saved all the lines after the difference in the for loop
- * above, now we need to save all the lines before the difference.
- */
- $max = min($startx - $bottoml1, $starty - $bottoml2);
- for ($i = 0; $i < $max; ++$i) {
- $this->removed[$bottoml1 + $i] =
- $this->added[$bottoml2 + $i] = false;
- }
- return $max + $len;
- }
- return $len;
- }
- private function find_middle_snake($bottoml1, $topl1, $bottoml2,$topl2, &$V, &$snake) {
- $from = &$this->from;
- $to = &$this->to;
- $V0 = &$V[0];
- $V1 = &$V[1];
- $snake0 = &$snake[0];
- $snake1 = &$snake[1];
- $snake2 = &$snake[2];
- $bottoml1_min_1 = $bottoml1-1;
- $bottoml2_min_1 = $bottoml2-1;
- $N = $topl1 - $bottoml1_min_1;
- $M = $topl2 - $bottoml2_min_1;
- $delta = $N - $M;
- $maxabsx = $N+$bottoml1;
- $maxabsy = $M+$bottoml2;
- $limit = min($this->maxDifferences, ceil(($N + $M ) / 2));
- //value_to_add_forward: a 0 or 1 that we add to the start
- // offset to make it odd/even
- if (($M & 1) == 1) {
- $value_to_add_forward = 1;
- } else {
- $value_to_add_forward = 0;
- }
- if (($N & 1) == 1) {
- $value_to_add_backward = 1;
- } else {
- $value_to_add_backward = 0;
- }
- $start_forward = -$M;
- $end_forward = $N;
- $start_backward = -$N;
- $end_backward = $M;
- $limit_min_1 = $limit - 1;
- $limit_plus_1 = $limit + 1;
- $V0[$limit_plus_1] = 0;
- $V1[$limit_min_1] = $N;
- $limit = min($this->maxDifferences, ceil(($N + $M ) / 2));
- if (($delta & 1) == 1) {
- for ($d = 0; $d <= $limit; ++$d) {
- $start_diag = max($value_to_add_forward + $start_forward, -$d);
- $end_diag = min($end_forward, $d);
- $value_to_add_forward = 1 - $value_to_add_forward;
- // compute forward furthest reaching paths
- for ($k = $start_diag; $k <= $end_diag; $k += 2) {
- if ($k == -$d || ($k < $d
- && $V0[$limit_min_1 + $k] < $V0[$limit_plus_1 + $k])) {
- $x = $V0[$limit_plus_1 + $k];
- } else {
- $x = $V0[$limit_min_1 + $k] + 1;
- }
- $absx = $snake0 = $x + $bottoml1;
- $absy = $snake1 = $x - $k + $bottoml2;
- while ($absx < $maxabsx && $absy < $maxabsy && $from[$absx] === $to[$absy]) {
- ++$absx;
- ++$absy;
- }
- $x = $absx-$bottoml1;
- $snake2 = $absx -$snake0;
- $V0[$limit + $k] = $x;
- if ($k >= $delta - $d + 1 && $k <= $delta + $d - 1
- && $x >= $V1[$limit + $k - $delta]) {
- return 2 * $d - 1;
- }
- // check to see if we can cut down the diagonal range
- if ($x >= $N && $end_forward > $k - 1) {
- $end_forward = $k - 1;
- } else if ($absy - $bottoml2 >= $M) {
- $start_forward = $k + 1;
- $value_to_add_forward = 0;
- }
- }
- $start_diag = max($value_to_add_backward + $start_backward, -$d);
- $end_diag = min($end_backward, $d);
- $value_to_add_backward = 1 - $value_to_add_backward;
- // compute backward furthest reaching paths
- for ($k = $start_diag; $k <= $end_diag; $k += 2) {
- if ($k == $d
- || ($k != -$d && $V1[$limit_min_1 + $k] < $V1[$limit_plus_1 + $k])) {
- $x = $V1[$limit_min_1 + $k];
- } else {
- $x = $V1[$limit_plus_1 + $k] - 1;
- }
- $y = $x - $k - $delta;
- $snake2 = 0;
- while ($x > 0 && $y > 0
- && $from[$x +$bottoml1_min_1] === $to[$y + $bottoml2_min_1]) {
- --$x;
- --$y;
- ++$snake2;
- }
- $V1[$limit + $k] = $x;
- // check to see if we can cut down our diagonal range
- if ($x <= 0) {
- $start_backward = $k + 1;
- $value_to_add_backward = 0;
- } else if ($y <= 0 && $end_backward > $k - 1) {
- $end_backward = $k - 1;
- }
- }
- }
- } else {
- for ($d = 0; $d <= $limit; ++$d) {
- $start_diag = max($value_to_add_forward + $start_forward, -$d);
- $end_diag = min($end_forward, $d);
- $value_to_add_forward = 1 - $value_to_add_forward;
- // compute forward furthest reaching paths
- for ($k = $start_diag; $k <= $end_diag; $k += 2) {
- if ($k == -$d
- || ($k < $d && $V0[$limit_min_1 + $k] < $V0[$limit_plus_1 + $k])) {
- $x = $V0[$limit_plus_1 + $k];
- } else {
- $x = $V0[$limit_min_1 + $k] + 1;
- }
- $absx = $snake0 = $x + $bottoml1;
- $absy = $snake1 = $x - $k + $bottoml2;
- while ($absx < $maxabsx && $absy < $maxabsy && $from[$absx] === $to[$absy]) {
- ++$absx;
- ++$absy;
- }
- $x = $absx-$bottoml1;
- $snake2 = $absx -$snake0;
- $V0[$limit + $k] = $x;
- // check to see if we can cut down the diagonal range
- if ($x >= $N && $end_forward > $k - 1) {
- $end_forward = $k - 1;
- } else if ($absy-$bottoml2 >= $M) {
- $start_forward = $k + 1;
- $value_to_add_forward = 0;
- }
- }
- $start_diag = max($value_to_add_backward + $start_backward, -$d);
- $end_diag = min($end_backward, $d);
- $value_to_add_backward = 1 - $value_to_add_backward;
- // compute backward furthest reaching paths
- for ($k = $start_diag; $k <= $end_diag; $k += 2) {
- if ($k == $d
- || ($k != -$d && $V1[$limit_min_1 + $k] < $V1[$limit_plus_1 + $k])) {
- $x = $V1[$limit_min_1 + $k];
- } else {
- $x = $V1[$limit_plus_1 + $k] - 1;
- }
- $y = $x - $k - $delta;
- $snake2 = 0;
- while ($x > 0 && $y > 0
- && $from[$x +$bottoml1_min_1] === $to[$y + $bottoml2_min_1]) {
- --$x;
- --$y;
- ++$snake2;
- }
- $V1[$limit + $k] = $x;
- if ($k >= -$delta - $d && $k <= $d - $delta
- && $x <= $V0[$limit + $k + $delta]) {
- $snake0 = $bottoml1 + $x;
- $snake1 = $bottoml2 + $y;
- return 2 * $d;
- }
- // check to see if we can cut down our diagonal range
- if ($x <= 0) {
- $start_backward = $k + 1;
- $value_to_add_backward = 0;
- } else if ($y <= 0 && $end_backward > $k - 1) {
- $end_backward = $k - 1;
- }
- }
- }
- }
- /*
- * computing the true LCS is too expensive, instead find the diagonal
- * with the most progress and pretend a midle snake of length 0 occurs
- * there.
- */
- $most_progress = self::findMostProgress($M, $N, $limit, $V);
- $snake0 = $bottoml1 + $most_progress[0];
- $snake1 = $bottoml2 + $most_progress[1];
- $snake2 = 0;
- wfDebug("Computing the LCS is too expensive. Using a heuristic.\n");
- $this->heuristicUsed = true;
- return 5; /*
- * HACK: since we didn't really finish the LCS computation
- * we don't really know the length of the SES. We don't do
- * anything with the result anyway, unless it's <=1. We know
- * for a fact SES > 1 so 5 is as good a number as any to
- * return here
- */
- }
- private static function findMostProgress($M, $N, $limit, $V) {
- $delta = $N - $M;
- if (($M & 1) == ($limit & 1)) {
- $forward_start_diag = max(-$M, -$limit);
- } else {
- $forward_start_diag = max(1 - $M, -$limit);
- }
- $forward_end_diag = min($N, $limit);
- if (($N & 1) == ($limit & 1)) {
- $backward_start_diag = max(-$N, -$limit);
- } else {
- $backward_start_diag = max(1 - $N, -$limit);
- }
- $backward_end_diag = -min($M, $limit);
- $temp = array(0, 0, 0);
- $max_progress = array_fill(0, ceil(max($forward_end_diag - $forward_start_diag,
- $backward_end_diag - $backward_start_diag) / 2), $temp);
- $num_progress = 0; // the 1st entry is current, it is initialized
- // with 0s
- // first search the forward diagonals
- for ($k = $forward_start_diag; $k <= $forward_end_diag; $k += 2) {
- $x = $V[0][$limit + $k];
- $y = $x - $k;
- if ($x > $N || $y > $M) {
- continue;
- }
- $progress = $x + $y;
- if ($progress > $max_progress[0][2]) {
- $num_progress = 0;
- $max_progress[0][0] = $x;
- $max_progress[0][1] = $y;
- $max_progress[0][2] = $progress;
- } else if ($progress == $max_progress[0][2]) {
- ++$num_progress;
- $max_progress[$num_progress][0] = $x;
- $max_progress[$num_progress][1] = $y;
- $max_progress[$num_progress][2] = $progress;
- }
- }
- $max_progress_forward = true; // initially the maximum
- // progress is in the forward
- // direction
- // now search the backward diagonals
- for ($k = $backward_start_diag; $k <= $backward_end_diag; $k += 2) {
- $x = $V[1][$limit + $k];
- $y = $x - $k - $delta;
- if ($x < 0 || $y < 0) {
- continue;
- }
- $progress = $N - $x + $M - $y;
- if ($progress > $max_progress[0][2]) {
- $num_progress = 0;
- $max_progress_forward = false;
- $max_progress[0][0] = $x;
- $max_progress[0][1] = $y;
- $max_progress[0][2] = $progress;
- } else if ($progress == $max_progress[0][2] && !$max_progress_forward) {
- ++$num_progress;
- $max_progress[$num_progress][0] = $x;
- $max_progress[$num_progress][1] = $y;
- $max_progress[$num_progress][2] = $progress;
- }
- }
- // return the middle diagonal with maximal progress.
- return $max_progress[floor($num_progress / 2)];
- }
- public function getLcsLength(){
- if($this->heuristicUsed && !$this->lcsLengthCorrectedForHeuristic){
- $this->lcsLengthCorrectedForHeuristic = true;
- $this->length = $this->m-array_sum($this->added);
- }
- return $this->length;
- }
- }
- /**
- * Alternative representation of a set of changes, by the index
- * ranges that are changed.
- *
- * @ingroup DifferenceEngine
- */
- class RangeDifference {
- public $leftstart;
- public $leftend;
- public $leftlength;
- public $rightstart;
- public $rightend;
- public $rightlength;
- function __construct($leftstart, $leftend, $rightstart, $rightend){
- $this->leftstart = $leftstart;
- $this->leftend = $leftend;
- $this->leftlength = $leftend - $leftstart;
- $this->rightstart = $rightstart;
- $this->rightend = $rightend;
- $this->rightlength = $rightend - $rightstart;
- }
- }
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