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- #!/usr/bin/env python
- # Copyright (C) 2007, 2012 Apple Inc. All rights reserved.
- #
- # Redistribution and use in source and binary forms, with or without
- # modification, are permitted provided that the following conditions
- # are met:
- # 1. Redistributions of source code must retain the above copyright
- # notice, this list of conditions and the following disclaimer.
- # 2. Redistributions in binary form must reproduce the above copyright
- # notice, this list of conditions and the following disclaimer in the
- # documentation and/or other materials provided with the distribution.
- #
- # THIS SOFTWARE IS PROVIDED BY APPLE COMPUTER, INC. ``AS IS'' AND ANY
- # EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
- # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL APPLE COMPUTER, INC. OR
- # CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
- # EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
- # PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
- # PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY
- # OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
- # (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
- # OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
- import math
- import sys
- import re
- import fileinput
- from optparse import OptionParser
- usage = "usage: %prog [options] [FILES]\n Compute the mean and 95% confidence interval of a sample set.\n Standard input or files must contain two or more decimal numbers, one per line."
- parser = OptionParser(usage=usage)
- parser.add_option("-u", "--unit", dest="unit", default="",
- help="assume values are in units of UNIT", metavar="UNIT")
- parser.add_option("-v", "--verbose",
- action="store_true", dest="verbose", default=False,
- help="print all values (with units)")
- (options, files) = parser.parse_args()
- def sum(items):
- return reduce(lambda x,y: x+y, items)
- def arithmeticMean(items):
- return sum(items) / len(items)
- def standardDeviation(mean, items):
- deltaSquares = [(item - mean) ** 2 for item in items]
- return math.sqrt(sum(deltaSquares) / (len(items) - 1))
- def standardError(stdDev, items):
- return stdDev / math.sqrt(len(items))
- # t-distribution for 2-sided 95% confidence intervals
- tDistribution = [float('NaN'), float('NaN'), 12.71, 4.30, 3.18, 2.78, 2.57, 2.45, 2.36, 2.31, 2.26, 2.23, 2.20, 2.18, 2.16, 2.14, 2.13, 2.12, 2.11, 2.10, 2.09, 2.09, 2.08, 2.07, 2.07, 2.06, 2.06, 2.06, 2.05, 2.05, 2.05, 2.04, 2.04, 2.04, 2.03, 2.03, 2.03, 2.03, 2.03, 2.02, 2.02, 2.02, 2.02, 2.02, 2.02, 2.02, 2.01, 2.01, 2.01, 2.01, 2.01, 2.01, 2.01, 2.01, 2.01, 2.00, 2.00, 2.00, 2.00, 2.00, 2.00, 2.00, 2.00, 2.00, 2.00, 2.00, 2.00, 2.00, 2.00, 2.00, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.99, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.98, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.97, 1.96]
- tMax = len(tDistribution)
- tLimit = 1.96
- def tDist(n):
- if n > tMax:
- return tLimit
- return tDistribution[n]
- def twoSidedConfidenceInterval(items):
- mean = arithmeticMean(items)
- stdDev = standardDeviation(mean, items)
- stdErr = standardError(stdDev, items)
- return tDist(len(items)) * stdErr
- results = []
- decimalNumberPattern = re.compile(r"\d+\.?\d*")
- for line in fileinput.input(files):
- match = re.search(decimalNumberPattern, line)
- if match:
- results.append(float(match.group(0)))
- if len(results) == 0:
- parser.print_help()
- quit()
- mean = arithmeticMean(results)
- confidenceInterval = twoSidedConfidenceInterval(results)
- confidencePercent = 100 * confidenceInterval / mean
- if options.verbose:
- length = 7
- for item in results:
- line = " %.2f %s" % (item, options.unit)
- print line
- length = len(line) if len(line) > length else length
- print "-" * length
- prefix = "Mean: " if options.verbose else ""
- print "%s%.2f %s +/- %.2f %s (%.1f%%)" % (prefix, mean, options.unit, confidenceInterval, options.unit, confidencePercent)
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