Branch:
user/anddt/development/glm
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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Andrew Clemons
a553be4fad
academic/meme-suite: Remove python3 dep (part of slackware).
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2 years ago | |
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| .. | ||
| README | b15b607c96 academic/meme-suite: Updated for version 5.1.0. | 4 years ago |
| README.DATABASES | b15b607c96 academic/meme-suite: Updated for version 5.1.0. | 4 years ago |
| README.TESTS | b15b607c96 academic/meme-suite: Updated for version 5.1.0. | 4 years ago |
| References | b15b607c96 academic/meme-suite: Updated for version 5.1.0. | 4 years ago |
| meme-suite.SlackBuild | 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var | 3 years ago |
| meme-suite.info | a553be4fad academic/meme-suite: Remove python3 dep (part of slackware). | 2 years ago |
| slack-desc | 54bdcd5c73 academic/meme-suite: Added (Motif based sequence analysis tools). | 7 years ago |
README
The MEME suite: motif based sequence analysis tools
The MEME Suite allows the biologist to discover novel motifs in
collections of unaligned nucleotide or protein sequences, and to perform
a wide variety of other motif-based analyses. The Suite supports motif-
based analysis of DNA, RNA and protein sequences. It provides motif
discovery algorithms using both probabilistic (MEME) and discrete models
(MEME), which have complementary strengths. It also allows discovery of
motifs with arbitrary insertions and deletions (GLAM2). In addition to
motif discovery, the MEME Suite provides tools for scanning sequences
for matches to motifs (FIMO, MAST and GLAM2Scan), scanning for clusters
of motifs (MCAST), comparing motifs to known motifs (Tomtom), finding
preferred spacings between motifs (SpaMo), predicting the biological
roles of motifs (GOMo), measuring the positional enrichment of sequences
for known motifs (CentriMo), and analyzing ChIP-seq and other large
datasets (MEME-ChIP).
Check README.TESTS for runing the recommended tests on the compiled
executables. Here, the tests *FAIL* on a 32bit system!
Check README.DATABASES for more info or if you want to install
meme-suite without the databases present at build time.
To cite the full MEME suite:
Timothy L. Bailey, Mikael Bodén, Fabian A. Buske, Martin Frith, Charles
E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William S. Noble,
"MEME SUITE: tools for motif discovery and searching", Nucleic Acids
Research, 37:W202-W208, 2009.
To cite individual tools, please check the citation page:
http://meme-suite.org/doc/cite.html
The MEME Suite allows the biologist to discover novel motifs in
collections of unaligned nucleotide or protein sequences, and to perform
a wide variety of other motif-based analyses. The Suite supports motif-
based analysis of DNA, RNA and protein sequences. It provides motif
discovery algorithms using both probabilistic (MEME) and discrete models
(MEME), which have complementary strengths. It also allows discovery of
motifs with arbitrary insertions and deletions (GLAM2). In addition to
motif discovery, the MEME Suite provides tools for scanning sequences
for matches to motifs (FIMO, MAST and GLAM2Scan), scanning for clusters
of motifs (MCAST), comparing motifs to known motifs (Tomtom), finding
preferred spacings between motifs (SpaMo), predicting the biological
roles of motifs (GOMo), measuring the positional enrichment of sequences
for known motifs (CentriMo), and analyzing ChIP-seq and other large
datasets (MEME-ChIP).
Check README.TESTS for runing the recommended tests on the compiled
executables. Here, the tests *FAIL* on a 32bit system!
Check README.DATABASES for more info or if you want to install
meme-suite without the databases present at build time.
To cite the full MEME suite:
Timothy L. Bailey, Mikael Bodén, Fabian A. Buske, Martin Frith, Charles
E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William S. Noble,
"MEME SUITE: tools for motif discovery and searching", Nucleic Acids
Research, 37:W202-W208, 2009.
To cite individual tools, please check the citation page:
http://meme-suite.org/doc/cite.html