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f27ea5443b
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12.0
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willysr
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Heinz Wiesinger
63daf9f79a
All: Support $PRINT_PACKAGE_NAME env var
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| README | 2f026a37f9 academic/lalnview: Update script. | 4 rokov pred |
| References | 026e465cdb academic/lalnview: various build fixes / tweaks | 12 rokov pred |
| doinst.sh | bb2dfa6f86 academic/lalnview: Added (Visualize local alignments) | 13 rokov pred |
| lalnview.SlackBuild | 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var | 3 rokov pred |
| lalnview.desktop | 026e465cdb academic/lalnview: various build fixes / tweaks | 12 rokov pred |
| lalnview.info | ec514e32c4 Multiple: update email, year and slack-desc | 8 rokov pred |
| lalnview.png | 2f026a37f9 academic/lalnview: Update script. | 4 rokov pred |
| slack-desc | ec514e32c4 Multiple: update email, year and slack-desc | 8 rokov pred |
README
LalnView is a graphical program for visualizing local alignments
between two sequences (protein or nucleic acids). Sequences are
represented by colored rectangles to give an overall picture of the
similarities between the two sequences. Blocks of similarity between
the two sequences are colored according to the degree of identity
between segments.
A suitable alignment tool for protein sequences is SIM at ExPASy:
https://web.expasy.org/sim/
SIM finds a user-defined number of best non-intersecting alignments
between two protein sequences or within a sequence. Once the alignment
is computed, you can view it using LalnView.
For details and citation:
Duret, L., Gasteiger, E. and Perriere, G. (1996) LalnView: a
graphical viewer for pairwise sequence alignments. Comput. Applic.
Biosci., 12, 507-510
between two sequences (protein or nucleic acids). Sequences are
represented by colored rectangles to give an overall picture of the
similarities between the two sequences. Blocks of similarity between
the two sequences are colored according to the degree of identity
between segments.
A suitable alignment tool for protein sequences is SIM at ExPASy:
https://web.expasy.org/sim/
SIM finds a user-defined number of best non-intersecting alignments
between two protein sequences or within a sequence. Once the alignment
is computed, you can view it using LalnView.
For details and citation:
Duret, L., Gasteiger, E. and Perriere, G. (1996) LalnView: a
graphical viewer for pairwise sequence alignments. Comput. Applic.
Biosci., 12, 507-510