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f27ea5443b
11.0
12.0
12.1
12.2
13.0
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14.0
14.1
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bedlam
bedlam-name-fixes
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erik
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user/anddt/development/gnustep-base
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user/anddt/misc/discount
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user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
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user/chris.willing/updates
user/dslackw/updates
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user/kingbeowulf/updates
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user/ponce/updates
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willysr
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Heinz Wiesinger
63daf9f79a
All: Support $PRINT_PACKAGE_NAME env var
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| README | 2f026a37f9 academic/lalnview: Update script. | 3 gadi atpakaļ |
| References | 026e465cdb academic/lalnview: various build fixes / tweaks | 12 gadi atpakaļ |
| doinst.sh | bb2dfa6f86 academic/lalnview: Added (Visualize local alignments) | 13 gadi atpakaļ |
| lalnview.SlackBuild | 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var | 3 gadi atpakaļ |
| lalnview.desktop | 026e465cdb academic/lalnview: various build fixes / tweaks | 12 gadi atpakaļ |
| lalnview.info | ec514e32c4 Multiple: update email, year and slack-desc | 8 gadi atpakaļ |
| lalnview.png | 2f026a37f9 academic/lalnview: Update script. | 3 gadi atpakaļ |
| slack-desc | ec514e32c4 Multiple: update email, year and slack-desc | 8 gadi atpakaļ |
README
LalnView is a graphical program for visualizing local alignments
between two sequences (protein or nucleic acids). Sequences are
represented by colored rectangles to give an overall picture of the
similarities between the two sequences. Blocks of similarity between
the two sequences are colored according to the degree of identity
between segments.
A suitable alignment tool for protein sequences is SIM at ExPASy:
https://web.expasy.org/sim/
SIM finds a user-defined number of best non-intersecting alignments
between two protein sequences or within a sequence. Once the alignment
is computed, you can view it using LalnView.
For details and citation:
Duret, L., Gasteiger, E. and Perriere, G. (1996) LalnView: a
graphical viewer for pairwise sequence alignments. Comput. Applic.
Biosci., 12, 507-510
between two sequences (protein or nucleic acids). Sequences are
represented by colored rectangles to give an overall picture of the
similarities between the two sequences. Blocks of similarity between
the two sequences are colored according to the degree of identity
between segments.
A suitable alignment tool for protein sequences is SIM at ExPASy:
https://web.expasy.org/sim/
SIM finds a user-defined number of best non-intersecting alignments
between two protein sequences or within a sequence. Once the alignment
is computed, you can view it using LalnView.
For details and citation:
Duret, L., Gasteiger, E. and Perriere, G. (1996) LalnView: a
graphical viewer for pairwise sequence alignments. Comput. Applic.
Biosci., 12, 507-510