Tree:
8d016693e2
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
15.0-20230325.1
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14.2-20181006.1
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Petar Petrov
102a4ff0e0
academic/bowtie: Updated for version 1.3.1.
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2 years ago | |
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| .. | ||
| patches | 7001301775 academic/bowtie: Updated for version 1.0.0. | 11 years ago |
| README | 687759e7cd academic/bowtie: Added (short read aligner of DNA sequences). | 11 years ago |
| References | 687759e7cd academic/bowtie: Added (short read aligner of DNA sequences). | 11 years ago |
| bowtie.SlackBuild | 102a4ff0e0 academic/bowtie: Updated for version 1.3.1. | 2 years ago |
| bowtie.info | 102a4ff0e0 academic/bowtie: Updated for version 1.3.1. | 2 years ago |
| slack-desc | 7001301775 academic/bowtie: Updated for version 1.0.0. | 11 years ago |
README
Bowtie is an ultrafast, memory-efficient short read aligner geared
toward quickly aligning large sets of short DNA sequences (reads) to
large genomes. It aligns 35-base-pair reads to the human genome at a
rate of 25 million reads per hour on a typical workstation. Bowtie
indexes the genome with a Burrows-Wheeler index to keep its memory
footprint small: for the human genome, the index is typically about
2.2GB (for unpaired alignment) or 2.9GB (for paired-end or colorspace
alignment). Multiple processors can be used simultaneously to achieve
greater alignment speed. Bowtie can also output alignments in the
standard SAM format, allowing Bowtie to interoperate with other tools
supporting SAM, including the SAMtools consensus, SNP, and indel
callers.
If you use Bowtie for your published research, please cite:
Langmead B, Trapnell C, Pop M, Salzberg SL.
Ultrafast and memory-efficient alignment of short DNA sequences to
the human genome. Genome Biol 10:R25.
toward quickly aligning large sets of short DNA sequences (reads) to
large genomes. It aligns 35-base-pair reads to the human genome at a
rate of 25 million reads per hour on a typical workstation. Bowtie
indexes the genome with a Burrows-Wheeler index to keep its memory
footprint small: for the human genome, the index is typically about
2.2GB (for unpaired alignment) or 2.9GB (for paired-end or colorspace
alignment). Multiple processors can be used simultaneously to achieve
greater alignment speed. Bowtie can also output alignments in the
standard SAM format, allowing Bowtie to interoperate with other tools
supporting SAM, including the SAMtools consensus, SNP, and indel
callers.
If you use Bowtie for your published research, please cite:
Langmead B, Trapnell C, Pop M, Salzberg SL.
Ultrafast and memory-efficient alignment of short DNA sequences to
the human genome. Genome Biol 10:R25.