Tree:
174dabd935
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
15.0-20230325.1
15.0-20230318.1
15.0-20230312.1
15.0-20230304.1
15.0-20230225.1
15.0-20230218.1
15.0-20230211.1
15.0-20230204.1
15.0-20230128.1
15.0-20230121.1
15.0-20230114.1
15.0-20230107.1
15.0-20221231.1
15.0-20221223.1
15.0-20221217.1
15.0-20221210.1
15.0-20221203.1
15.0-20221126.1
15.0-20221119.1
15.0-20221112.1
15.0-20221105.1
15.0-20221029.1
15.0-20221020.1
15.0-20221015.1
15.0-20221008.1
15.0-20221001.1
15.0-20220925.1
15.0-20220917.1
15.0-20220910.1
15.0-20220903.1
15.0-20220827.1
15.0-20220820.1
15.0-20220813.1
15.0-20220806.1
15.0-20220730.1
15.0-20220723.1
15.0-20220716.1
15.0-20220709.1
15.0-20220702.1
15.0-20220618.1
15.0-20220611.1
15.0-20220604.1
15.0-20220528.1
15.0-20220521.1
15.0-20220514.1
15.0-20220507.1
15.0-20220430.1
15.0-20220423.1
15.0-20220416.1
15.0-20220409.1
15.0-20220402.1
15.0-20220326.1
15.0-20220320.1
15.0-20220317.1
15.0-20220312.1
15.0-20220311.1
14.2-20210417.1
14.2-20210410.1
14.2-20210403.1
14.2-20210327.1
14.2-20210320.1
14.2-20210313.1
14.2-20210306.1
14.2-20210227.1
14.2-20210220.1
14.2-20210213.1
14.2-20210206.1
14.2-20210130.1
14.2-20210123.1
14.2-20210117.1
14.2-20210109.1
14.2-20210102.1
14.2-20201226.1
14.2-20201219.1
14.2-20201212.1
14.2-20201206.1
14.2-20201128.1
14.2-20201121.1
14.2-20201114.1
14.2-20201107.1
14.2-20201031.1
14.2-20201024.1
14.2-20201017.1
14.2-20201010.1
14.2-20201003.1
14.2-20200926.1
14.2-20200919.1
14.2-20200912.1
14.2-20200905.1
14.2-20200829.1
14.2-20200628.1
14.2-20200620.1
14.2-20200614.1
14.2-20200606.1
14.2-20200601.1
14.2-20200523.1
14.2-20200516.1
14.2-20200510.1
14.2-20200503.1
14.2-20200424.1
14.2-20200419.1
14.2-20200411.1
14.2-20200406.1
14.2-20200404.1
14.2-20200328.1
14.2-20200321.1
14.2-20200314.1
14.2-20200307.1
14.2-20200229.1
14.2-20200223.1
14.2-20200215.1
14.2-20200208.1
14.2-20200201.1
14.2-20200126.1
14.2-20200118.1
14.2-20200112.1
14.2-20200103.1
14.2-20191231.1
14.2-20191221.1
14.2-20191215.1
14.2-20191207.1
14.2-20191201.1
14.2-20191123.1
14.2-20191116.1
14.2-20191109.1
14.2-20191102.1
14.2-20191026.1
14.2-20191019.1
14.2-20191012.1
14.2-20191005.1
14.2-20190928.1
14.2-20190921.1
14.2-20190914.1
14.2-20190907.1
14.2-20190831.1
14.2-20190824.1
14.2-20190818.1
14.2-20190810.1
14.2-20190803.1
14.2-20190727.1
14.2-20190720.1
14.2-20190713.1
14.2-20190706.2
14.2-20190706.1
14.2-20190629.1
14.2-20190622.1
14.2-20190615.1
14.2-20190608.1
14.2-20190601.1
14.2-20190525.1
14.2-20190518.1
14.2-20190511.1
14.2-20190504.1
14.2-20190427.1
14.2-20190420.1
14.2-20190413.1
14.2-20190406.1
14.2-20190330.1
14.2-20190323.1
14.2-20190316.1
14.2-20190302.1
14.2-20190223.1
14.2-20190217.1
14.2-20190209.1
14.2-20190202.1
14.2-20190126.1
14.2-20190119.1
14.2-20190112.1
14.2-20190105.1
14.2-20181229.1
14.2-20181225.1
14.2-20181222.1
14.2-20181215.1
14.2-20181209.1
14.2-20181201.1
14.2-20181124.1
14.2-20181117.1
14.2-20181110.1
14.2-20181103.1
14.2-20181027.1
14.2-20181020.1
14.2-20181013.1
14.2-20181006.1
14.2-20180929.1
14.2-20180923.1
14.2-20180922.1
14.2-20180915.1
14.2-20180908.1
14.2-20180901.1
14.2-20180825.1
14.2-20180818.1
14.2-20180811.1
14.2-20180804.1
14.2-20180728.1
14.2-20180721.1
14.2-20180717.1
14.2-20180714.1
14.2-20180707.1
14.2-20180630.1
14.2-20180623.1
14.2-20180618.1
14.2-20180614.1
14.2-20180609.1
14.2-20180602.1
14.2-20180526.1
14.2-20180520.1
14.2-20180519.1
14.2-20180512.1
14.2-20180504.1
14.2-20180427.1
14.2-20180421.1
14.2-20180414.1
14.2-20180407.1
14.2-20180401.1
14.2-20180331.1
14.2-20180324.1
14.2-20180317.1
14.2-20180310.1
14.2-20180305.1
14.2-20180303.1
14.2-20180224.1
14.2-20180217.1
14.2-20180210.1
14.2-20180203.1
14.2-20180127.1
14.2-20180120.1
14.2-20180117.1
14.2-20180113.1
14.2-20180110.1
14.2-20180106.1
14.2-20171228.1
14.2-20171223.1
14.2-20171221.1
14.2-20171216.1
14.2-20171209.1
14.2-20171201.1
14.2-20171124.1
14.2-20171120.1
14.2-20171118.1
14.2-20171111.1
14.2-20171104.1
14.2-20171101
14.2-20171028.1
14.2-20171021.1
14.2-20171014.2
14.2-20171014.1
14.2-20171010.1
14.2-20171007.1
14.2-20170930.1
14.2-20170923.1
14.2-20170917.1
14.2-20170916.1
14.2-20170909.1
14.2-20170902.1
14.2-20170826.1
14.2-20170819.1
14.2-20170813.1
14.2-20170812.1
14.2-20170805.1
14.2-20170729.1
14.2-20170726.1
14.2-20170722.1
14.2-20170715.1
14.2-20170712.1
14.2-20170708.1
14.2-20170701.1
14.2-20170624.1
14.2-20170617.1
14.2-20170615.1
14.2-20170610.1
14.2-20170606.1
14.2-20170603.1
14.2-20170527.1
14.2-20170520.1
14.2-20170513.1
14.2-20170506.1
14.2-20170429.1
14.2-20170422.1
14.2-20170415.1
14.2-20170413.1
14.2-20170408.2
14.2-20170408.1
14.2-20170401.1
14.2-20170326.1
14.2-20170325.1
14.2-20170318.1
14.2-20170311.1
14.2-20170305.1
14.2-20170304.1
14.2-20170225.1
14.2-20170221.1
14.2-20170218.1
14.2-20170211.1
14.2-20170204.1
14.2-20170128.1
14.2-20170124.1
14.2-20170121.1
14.2-20170114.1
14.2-20170110.1
14.2-20170109.1
14.2-20170107.1
14.2-20161231.1
14.2-20161224.1
14.2-20161217.2
14.2-20161217.1
14.2-20161210.1
14.2-20161204.1
14.2-20161203.1
14.2-20161126.1
14.2-20161119.1
14.2-20161115.1
14.2-20161114.1
14.2-20161112.1
14.2-20161111.1
14.2-20161105.1
14.2-20161029.1
14.2-20161022.1
14.2-20161015.1
14.2-20161008.1
14.2-20161001.2
14.2-20161001.1
14.2-20160925.1
14.2-20160924.1
14.2-20160917.1
14.2-20160914.2
14.2-20160914.1
14.2-20160911.2
14.2-20160911.1
14.2-20160903.1
14.2-20160827.1
14.2-20160820.1
14.2-20160814.1
14.2-20160813.1
14.2-20160807.1
14.2-20160805.1
14.2-20160730.1
14.2-20160724.1
14.2-20160721.1
14.2-20160720.2
14.2-20160720.1
14.2-20160717.2
14.2-20160717.1
14.2-20160709.1
14.2-20160702.2
14.2-20160702.1
14.1-20160902.1
14.1-20160629.1
14.1-20160627.2
14.1-20160627.1
14.1-20160625.1
14.1-20160623.1
14.1-20160619.2
14.1-20160619.1
14.1-20160512.1
14.1-20160419.1
14.1-20160407.1
14.1-20160403.1
14.1-20160321.1
14.1-20160227.1
14.1-20160117.1
14.1-20160113.1
14.1-20160111.1
14.1-20160109.1
14.1-20160101.1
14.1-20151225.2
14.1-20151225.1
14.1-20151219.1
14.1-20151212.1
14.1-20151205.1
14.1-20151128.1
14.1-20151121.1
14.1-20151114.1
14.1-20151107.1
14.1-20151031.1
14.1-20151024.1
14.1-20151018.1
14.1-20151010.1
14.1-20151003.1
14.1-20150926.1
14.1-20150919.1
14.1-20150912.1
14.1-20150906.1
14.1-20150905.1
14.1-20150829.2
14.1-20150829.1
14.1-20150822.1
14.1-20150815.1
14.1-20150809.1
14.1-20150801.1
14.1-20150725.1
14.1-20150716.1
14.1-20150712.1
14.1-20150708.1
14.1-20150704.1
14.1-20150628.2
14.1-20150628.1
14.1-20150620.2
14.1-20150620.1
14.1-20150614.2
14.1-20150614.1
14.1-20150607.1
14.1-20150531.1
14.1-20150524.1
14.1-20150517.1
14.1-20150510.1
14.1-20150503.1
14.1-20150426.1
14.1-20150419.1
14.1-20150412.1
14.1-20150405.1
14.1-20150329.1
14.1-20150322.1
14.1-20150314.1
14.1-20150307.1
14.1-20150228.2
14.1-20150228.1
14.1-20150221.1
14.1-20150215.1
14.1-20150208.1
14.1-20150207.1
14.1-20150131.1
14.1-20150124.1
14.1-20150118.1
14.1-20150110.1
14.1-20150103.1
14.1-20141231.1
14.1-20141228.1
14.1-20141225.1
14.1-20141220.1
14.1-20141213.1
14.1-20141206.1
14.1-20141129.2
14.1-20141129.1
14.1-20141122.1
14.1-20141115.1
14.1-20141107.1
14.1-20141101.1
14.1-20141025.1
14.1-20141018.2
14.1-20141018.1
14.1-20141011.1
14.1-20141005.1
14.1-20140927.1
14.1-20140920.1
14.1-20140913.1
14.1-20140905.2
14.1-20140905.1
14.1-20140830.2
14.1-20140830.1
14.1-20140822.1
14.1-20140815.1
14.1-20140809.1
14.1-20140803.1
14.1-20140722.1
14.1-20140717.1
14.1-20140707.1
14.1-20140705.1
14.1-20140629.2
14.1-20140629.1
14.1-20140623.1
14.1-20140618.1
14.1-20140611.1
14.1-20140604.1
14.1-20140528.1
14.1-20140520.1
14.1-20140514.1
14.1-20140505.1
14.1-20140429.1
14.1-20140427.1
14.1-20140423.1
14.1-20140414.1
14.1-20140413.1
14.1-20140412.1
14.1-20140322.1
14.1-20140321.1
14.1-20140312.1
14.1-20140307.1
14.1-20140221.1
14.1-20140218.1
14.1-20140216.1
14.1-20140211.1
14.1-20140208.1
14.1-20140202.2
14.1-20140202.1
14.1-20140201.1
14.1-20140130.1
14.1-20140107.1
14.1-20131225.1
14.1-20131217.1
14.1-20131214.1
14.1-20131206.1
14.1-20131202.1
14.1-20131130.1
14.1-20131128.1
14.1-20131126.1
14.1-20130321.1
14.0-20131116.1
14.0-20131114.2
14.0-20131114.1
14.0-20131112.1
14.0-20131111.1
14.0-20131106.1
14.0-20131104.1
14.0-20131031.1
14.0-20131030.1
14.0-20131028.1
14.0-20131012.1
14.0-20130714.2
14.0-20130714.1
14.0-20130707.1
14.0-20130702.1
14.0-20130629.1
14.0-20130623.1
14.0-20130616.1
14.0-20130609.1
14.0-20130605.1
14.0-20130604.1
14.0-20130513.1
14.0-20130428.1
14.0-20130415.2
14.0-20130415.1
14.0-20130322.1
14.0-20130304.1
14.0-20130225.1
14.0-20130223.1
14.0-20130214.1
14.0-20130206.1
14.0-20130120.1
14.0-20130110.1
14.0-20130101.1
14.0-20121230.1
14.0-20121225.1
14.0-20121223.1
14.0-20121212.1
14.0-20121124.1
14.0-20121118.1
14.0-20121104.1
14.0-20121018.1
14.0-20121007.2
14.0-20121007.1
14.0-20121002.1
13.37-20120815.1
13.37-20120801.1
13.37-20120721.1
13.37-20120702.1
13.37-20120701.1
13.37-20120603.1
13.37-20120527.1
13.37-20120521.1
13.37-20120514.1
13.37-20120508.1
13.37-20120507.1
13.37-20120430.1
13.37-20120422.1
13.37-20120416.1
13.37-20120409.1
13.37-20120402.1
13.37-20120330.1
13.37-20120329.1
13.37-20120220.2
13.37-20120220.1
13.37-20120218.1
13.37-20120212.1
13.37-20120113.1
13.37-20111231.1
13.37-20111227.1
13.37-20111223.1
13.37-20111222.1
13.37-20111218.2
13.37-20111218.1
13.37-20111211.1
13.37-20111126.2
13.37-20111126.1
13.37-20111105.1
13.37-20111022.1
13.37-20111012.1
13.37-20110929.1
13.37-20110921.1
13.37-20110906.1
13.37-20110905.1
13.37-20110829.1
13.37-20110811.1
13.37-20110722.1
13.37-20110714.1
13.37-20110620.1
13.37-20110613.1
13.37-20110519.1
13.37-20110517.1
13.37-20110503.1
13.37-20110427.1
13.1-20120121.1
13.1-20110406.1
13.1-20110327.1
13.1-20110314.1
13.1-20110310.1
13.1-20110308.1
13.1-20110304.1
13.1-20110301.1
13.1-20110228.1
13.1-20110207.1
13.1-20110116.1
13.1-20110110.1
13.1-20110102.1
13.1-20110101.1
13.1-20101229.1
13.1-20101227.1
13.1-20101221.1
13.1-20101217.1
13.1-20101212.2
13.1-20101212.1
13.1-20101207
13.1-20101205
13.1-20101129.1
13.1-20101122.1
13.1-20101025.1
13.1-20101020.1
13.1-20101018.1
13.1-20101012.1
13.1-20100922.1
13.1-20100912.1
13.1-20100830.1
13.1-20100829.1
13.1-20100823.1
13.1-20100818.1
13.1-20100816.1
13.1-20100815.1
13.1-20100811.1
13.1-20100801.1
13.1-20100726.1
13.1-20100721.1
13.1-20100716.1
13.1-20100711.1
13.1-20100710.1
13.1-20100708.2
13.1-20100708.1
13.1-20100706.1
13.1-20100704.2
13.1-20100704.1
13.1-20100703.2
13.1-20100703.1
13.1-20100702.1
13.1-20100701.2
13.1-20100701.1
13.1-20100630.1
13.1-20100629.1
13.1-20100623.1
13.1-20100620.1
13.1-20100617.2
13.1-20100617.1
13.1-20100616.2
13.1-20100616.1
13.1-20100615.1
13.1-20100614.2
13.1-20100614.1
13.1-20100613
13.1-20100612
13.1-20100609
13.1-20100606
13.1-20100605
13.1-20100527.2
13.1-20100527.1
13.1-20100517
13.1-20100428
13.1-20100422
13.1-20100410
13.1-20100407
13.1-20100324
13.1-20100322
13.1-20100321.2
13.1-20100321
13.1-20100217.1
Petar Petrov
399c06897e
academic/PhyML: Updated for version 20120412.
|
12 years ago | |
|---|---|---|
| .. | ||
| PhyML.SlackBuild | 399c06897e academic/PhyML: Updated for version 20120412. | 12 years ago |
| PhyML.info | 399c06897e academic/PhyML: Updated for version 20120412. | 12 years ago |
| README | 399c06897e academic/PhyML: Updated for version 20120412. | 12 years ago |
| References | f3eaf0c230 academic/PhyML: Updated for version 20110919. | 12 years ago |
| slack-desc | 399c06897e academic/PhyML: Updated for version 20120412. | 12 years ago |
README
PhyML is a software that estimates maximum likelihood phylogenies
from alignments of nucleotide or amino acid sequences. It provides a
wide range of options that were designed to facilitate standard
phylogenetic analyses. The main strengths of PhyML lies in the large
number of substitution models coupled to various options to search
the space of phylogenetic tree topologies, going from very fast and
efficient methods to slower but generally more accurate approaches.
It also implements two methods to evaluate branch supports in a sound
statistical framework (the non-parametric bootstrap and the
approximate likelihood ratio test).
For details and citation
New Algorithms and Methods to Estimate Maximum-Likelihood
Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S.,
Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O.
Systematic Biology, 59(3):307-21, 2010.
from alignments of nucleotide or amino acid sequences. It provides a
wide range of options that were designed to facilitate standard
phylogenetic analyses. The main strengths of PhyML lies in the large
number of substitution models coupled to various options to search
the space of phylogenetic tree topologies, going from very fast and
efficient methods to slower but generally more accurate approaches.
It also implements two methods to evaluate branch supports in a sound
statistical framework (the non-parametric bootstrap and the
approximate likelihood ratio test).
For details and citation
New Algorithms and Methods to Estimate Maximum-Likelihood
Phylogenies: Assessing the Performance of PhyML 3.0. Guindon S.,
Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O.
Systematic Biology, 59(3):307-21, 2010.