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Heinz Wiesinger
63daf9f79a
All: Support $PRINT_PACKAGE_NAME env var
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| desktop | fe3095faf8 academic/staden: Several fixes/enhancements | 13 éve |
| README | 9d8a8a88ef academic/staden: Updated for version 2.0.0b10. | 11 éve |
| References | 7bf998ee43 academic/staden: Added (DNA sequence assembly, editing, and analysis tools) | 13 éve |
| doinst.sh | 7bf998ee43 academic/staden: Added (DNA sequence assembly, editing, and analysis tools) | 13 éve |
| slack-desc | 1f0c859cff academic/staden: Updated for version 2.0.0b11. | 8 éve |
| staden.SlackBuild | 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var | 3 éve |
| staden.info | 1f0c859cff academic/staden: Updated for version 2.0.0b11. | 8 éve |
README
The programs part of the Staden package provide an excellent and fully
developed set of DNA sequence assembly, editing, analysis and more.
Some of its features include:
GAP4 - Performs assembly, contig joining, assembly checking, repeat
search, experiment suggestion, read pair analysis and contig
editing.
GAP5 - The new development version of Gap4, designed to work with the
large volumes of data attainable through the newer sequencing
technologies.
PREGAP4 - Provides a graphical user interface to set up the processing
required to prepare trace data for assembly or analysis.
SPIN - Compares pairs of sequences in many ways, often presenting its
results graphically and has a sliding sequence window linked to
the plots.
TREV - A rapid and flexible viewer and editor for ABI, ALF or SCF
trace files.
For more information and citing, visit Staden's web page and check the
"References" file in the documentation.
developed set of DNA sequence assembly, editing, analysis and more.
Some of its features include:
GAP4 - Performs assembly, contig joining, assembly checking, repeat
search, experiment suggestion, read pair analysis and contig
editing.
GAP5 - The new development version of Gap4, designed to work with the
large volumes of data attainable through the newer sequencing
technologies.
PREGAP4 - Provides a graphical user interface to set up the processing
required to prepare trace data for assembly or analysis.
SPIN - Compares pairs of sequences in many ways, often presenting its
results graphically and has a sliding sequence window linked to
the plots.
TREV - A rapid and flexible viewer and editor for ABI, ALF or SCF
trace files.
For more information and citing, visit Staden's web page and check the
"References" file in the documentation.