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Matteo Bernardini
094b36db14
academic/paml: Remove stray symlink.
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| README | c8eed62852 academic/paml: Updated for version 4.8a. | 10 lat temu |
| References | 8c35f38c04 academic/paml: Added (Phylogenetic Analysis by Maximum Likelihood). | 11 lat temu |
| paml.SlackBuild | 209f6ef0d2 academic/paml: Updated for version 4.10.5. | 2 lat temu |
| paml.info | 209f6ef0d2 academic/paml: Updated for version 4.10.5. | 2 lat temu |
| slack-desc | 354557ac88 academic/paml: Updated for version 4.9g. | 7 lat temu |
README
PAML: Phylogenetic Analysis by Maximum Likelihood
PAML is a package of programs for phylogenetic analyses of DNA or
protein sequences using maximum likelihood. PAML is not good for tree
making. It may be used to estimate parameters and test hypotheses to
study the evolutionary process, when you have reconstructed trees
using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.
Notes about running of PAML programs and the package:
- Example datasets are included in /usr/share/paml/examples
- Control files for PAML programs are in /usr/share/paml
- Additional executables are placed in /usr/libexec/paml
Suggested citation:
Yang, Z. 2007. PAML 4: a program package for phylogenetic analysis by
maximum likelihood. Molecular Biology and Evolution 24: 1586-1591
PAML is a package of programs for phylogenetic analyses of DNA or
protein sequences using maximum likelihood. PAML is not good for tree
making. It may be used to estimate parameters and test hypotheses to
study the evolutionary process, when you have reconstructed trees
using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.
Notes about running of PAML programs and the package:
- Example datasets are included in /usr/share/paml/examples
- Control files for PAML programs are in /usr/share/paml
- Additional executables are placed in /usr/libexec/paml
Suggested citation:
Yang, Z. 2007. PAML 4: a program package for phylogenetic analysis by
maximum likelihood. Molecular Biology and Evolution 24: 1586-1591