Tree:
0239b1e919
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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13.1-20100217.1
Heinz Wiesinger
63daf9f79a
All: Support $PRINT_PACKAGE_NAME env var
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| README | 2f026a37f9 academic/lalnview: Update script. | 4 years ago |
| References | 026e465cdb academic/lalnview: various build fixes / tweaks | 13 years ago |
| doinst.sh | bb2dfa6f86 academic/lalnview: Added (Visualize local alignments) | 13 years ago |
| lalnview.SlackBuild | 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var | 3 years ago |
| lalnview.desktop | 026e465cdb academic/lalnview: various build fixes / tweaks | 13 years ago |
| lalnview.info | ec514e32c4 Multiple: update email, year and slack-desc | 9 years ago |
| lalnview.png | 2f026a37f9 academic/lalnview: Update script. | 4 years ago |
| slack-desc | ec514e32c4 Multiple: update email, year and slack-desc | 9 years ago |
README
LalnView is a graphical program for visualizing local alignments
between two sequences (protein or nucleic acids). Sequences are
represented by colored rectangles to give an overall picture of the
similarities between the two sequences. Blocks of similarity between
the two sequences are colored according to the degree of identity
between segments.
A suitable alignment tool for protein sequences is SIM at ExPASy:
https://web.expasy.org/sim/
SIM finds a user-defined number of best non-intersecting alignments
between two protein sequences or within a sequence. Once the alignment
is computed, you can view it using LalnView.
For details and citation:
Duret, L., Gasteiger, E. and Perriere, G. (1996) LalnView: a
graphical viewer for pairwise sequence alignments. Comput. Applic.
Biosci., 12, 507-510
between two sequences (protein or nucleic acids). Sequences are
represented by colored rectangles to give an overall picture of the
similarities between the two sequences. Blocks of similarity between
the two sequences are colored according to the degree of identity
between segments.
A suitable alignment tool for protein sequences is SIM at ExPASy:
https://web.expasy.org/sim/
SIM finds a user-defined number of best non-intersecting alignments
between two protein sequences or within a sequence. Once the alignment
is computed, you can view it using LalnView.
For details and citation:
Duret, L., Gasteiger, E. and Perriere, G. (1996) LalnView: a
graphical viewer for pairwise sequence alignments. Comput. Applic.
Biosci., 12, 507-510