Tree:
0239b1e919
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
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user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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B. Watson
62106a0902
academic/jellyfish_k-mer: Remove .la files.
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2 years ago | |
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| README | 207b4e9661 academic/jellyfish_k-mer: Added (k-mers counting tools). | 6 years ago |
| jellyfish_k-mer.SlackBuild | 62106a0902 academic/jellyfish_k-mer: Remove .la files. | 2 years ago |
| jellyfish_k-mer.info | 207b4e9661 academic/jellyfish_k-mer: Added (k-mers counting tools). | 6 years ago |
| slack-desc | 207b4e9661 academic/jellyfish_k-mer: Added (k-mers counting tools). | 6 years ago |
README
Jellyfish is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences of
all such substrings is a central step in many analyses of DNA sequence.
Jellyfish can count k-mers quickly by using an efficient encoding of a
hash table and by exploiting the "compare-and-swap" CPU instruction to
increase parallelism.
Jellyfish is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an binary
format, which can be translated into a human-readable text format using
the "jellyfish dump" command. See the documentation below for more
details.
DNA. A k-mer is a substring of length k, and counting the occurrences of
all such substrings is a central step in many analyses of DNA sequence.
Jellyfish can count k-mers quickly by using an efficient encoding of a
hash table and by exploiting the "compare-and-swap" CPU instruction to
increase parallelism.
Jellyfish is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an binary
format, which can be translated into a human-readable text format using
the "jellyfish dump" command. See the documentation below for more
details.