- #!/bin/bash
- # https://jameshfisher.com/2020/02/09/diffing-coronaviruses/
- fetch_genome() {
- curl -s "https://www.ncbi.nlm.nih.gov/sviewer/viewer.cgi?report=fasta&id=$1" \
- | grep -v '^>' | tr -d '\n' | sed 's/\(.\)/\1 /g' | sed 's/ / /g' > $1
- }
- fetch_genome $1
- fetch_genome $2
- wdiff -s -123 $1 $2
- # diff $1 $2
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