ood-ports-lbsd/biology/emboss/pkg/PLIST

@comment $OpenBSD: PLIST,v 1.5 2015/03/16 18:07:37 naddy Exp $
@conflict aguri-*
@conflict pscan-*
@bin bin/aaindexextract
@bin bin/abiview
@bin bin/acdc
@bin bin/acdpretty
@bin bin/acdtable
@bin bin/acdtrace
@bin bin/acdvalid
@bin bin/aligncopy
@bin bin/aligncopypair
@bin bin/antigenic
@bin bin/backtranambig
@bin bin/backtranseq
@bin bin/banana
@bin bin/biosed
@bin bin/btwisted
@bin bin/cai
@bin bin/chaos
@bin bin/charge
@bin bin/checktrans
@bin bin/chips
@bin bin/cirdna
@bin bin/codcmp
@bin bin/codcopy
@bin bin/coderet
@bin bin/compseq
@bin bin/cons
@bin bin/consambig
@bin bin/cpgplot
@bin bin/cpgreport
@bin bin/cusp
@bin bin/cutgextract
@bin bin/cutseq
@bin bin/dan
@bin bin/dbiblast
@bin bin/dbifasta
@bin bin/dbiflat
@bin bin/dbigcg
@bin bin/dbxfasta
@bin bin/dbxflat
@bin bin/dbxgcg
@bin bin/degapseq
@bin bin/density
@bin bin/descseq
@bin bin/diffseq
@bin bin/digest
@bin bin/distmat
@bin bin/dotmatcher
@bin bin/dotpath
@bin bin/dottup
@bin bin/dreg
@bin bin/edialign
@bin bin/einverted
@bin bin/embossdata
@bin bin/embossversion
@bin bin/emma
@bin bin/emowse
@bin bin/entret
@bin bin/epestfind
@bin bin/eprimer3
@bin bin/equicktandem
@bin bin/est2genome
@bin bin/etandem
@bin bin/extractalign
@bin bin/extractfeat
@bin bin/extractseq
@bin bin/featcopy
@bin bin/featreport
@bin bin/findkm
@bin bin/freak
@bin bin/fuzznuc
@bin bin/fuzzpro
@bin bin/fuzztran
@bin bin/garnier
@bin bin/geecee
@bin bin/getorf
@bin bin/helixturnhelix
@bin bin/hmoment
@bin bin/iep
@bin bin/infoalign
@bin bin/infobase
@bin bin/inforesidue
@bin bin/infoseq
@bin bin/isochore
@bin bin/jaspextract
@bin bin/jaspscan
@bin bin/jembossctl
@bin bin/lindna
@bin bin/listor
@bin bin/makenucseq
@bin bin/makeprotseq
@bin bin/marscan
@bin bin/maskambignuc
@bin bin/maskambigprot
@bin bin/maskfeat
@bin bin/maskseq
@bin bin/matcher
@bin bin/megamerger
@bin bin/merger
@bin bin/msbar
@bin bin/mwcontam
@bin bin/mwfilter
@bin bin/needle
@bin bin/newcpgreport
@bin bin/newcpgseek
@bin bin/newseq
@bin bin/nohtml
@bin bin/noreturn
@bin bin/nospace
@bin bin/notab
@bin bin/notseq
@bin bin/nthseq
@bin bin/octanol
@bin bin/oddcomp
@bin bin/palindrome
@bin bin/pasteseq
@bin bin/patmatdb
@bin bin/patmatmotifs
@bin bin/pepcoil
@bin bin/pepinfo
@bin bin/pepnet
@bin bin/pepstats
@bin bin/pepwheel
@bin bin/pepwindow
@bin bin/pepwindowall
@bin bin/plotcon
@bin bin/plotorf
@bin bin/polydot
@bin bin/preg
@bin bin/prettyplot
@bin bin/prettyseq
@bin bin/primersearch
@bin bin/printsextract
@bin bin/profit
@bin bin/prophecy
@bin bin/prophet
@bin bin/prosextract
@bin bin/pscan
@bin bin/psiphi
@bin bin/rebaseextract
@bin bin/recoder
@bin bin/redata
@bin bin/remap
@bin bin/restover
@bin bin/restrict
@bin bin/revseq
bin/runJemboss.csh
@bin bin/seealso
@bin bin/seqmatchall
@bin bin/seqret
@bin bin/seqretsplit
@bin bin/showalign
@bin bin/showdb
@bin bin/showfeat
@bin bin/showorf
@bin bin/showseq
@bin bin/shuffleseq
@bin bin/sigcleave
@bin bin/silent
@bin bin/sirna
@bin bin/sixpack
@bin bin/sizeseq
@bin bin/skipredundant
@bin bin/skipseq
@bin bin/splitter
@bin bin/stretcher
@bin bin/stssearch
@bin bin/supermatcher
@bin bin/syco
@bin bin/tcode
@bin bin/textsearch
@bin bin/tfextract
@bin bin/tfm
@bin bin/tfscan
@bin bin/tmap
@bin bin/tranalign
@bin bin/transeq
@bin bin/trimest
@bin bin/trimseq
@bin bin/trimspace
@bin bin/twofeat
@bin bin/union
@bin bin/vectorstrip
@bin bin/water
@bin bin/whichdb
@bin bin/wobble
@bin bin/wordcount
@bin bin/wordfinder
@bin bin/wordmatch
@bin bin/wossname
@bin bin/yank
include/ajacd.h
include/ajalign.h
include/ajarch.h
include/ajarr.h
include/ajassert.h
include/ajax.h
include/ajbase.h
include/ajcall.h
include/ajcod.h
include/ajdan.h
include/ajdefine.h
include/ajdmx.h
include/ajdom.h
include/ajdomain.h
include/ajexcept.h
include/ajfeat.h
include/ajfeatdata.h
include/ajfile.h
include/ajfiledata.h
include/ajfileio.h
include/ajfmt.h
include/ajgraph.h
include/ajgraphstruct.h
include/ajgraphxml.h
include/ajhist.h
include/ajindex.h
include/ajjava.h
include/ajlist.h
include/ajmath.h
include/ajmatrices.h
include/ajmem.h
include/ajmess.h
include/ajnam.h
include/ajnexus.h
include/ajpat.h
include/ajpdb.h
include/ajpdbio.h
include/ajphylo.h
include/ajrange.h
include/ajreg.h
include/ajreport.h
include/ajseq.h
include/ajseqabi.h
include/ajseqdata.h
include/ajseqdb.h
include/ajseqread.h
include/ajseqtype.h
include/ajseqwrite.h
include/ajsort.h
include/ajstr.h
include/ajsys.h
include/ajtable.h
include/ajtime.h
include/ajtranslate.h
include/ajtree.h
include/ajutil.h
include/ajvector.h
include/embaln.h
include/embcom.h
include/embcons.h
include/embdata.h
include/embdbi.h
include/embdmx.h
include/embdomain.h
include/embest.h
include/embexit.h
include/embgroup.h
include/embiep.h
include/embindex.h
include/embinit.h
include/embmat.h
include/embmisc.h
include/embmol.h
include/embnmer.h
include/emboss.h
include/embpat.h
include/embpatlist.h
include/embpdb.h
include/embprop.h
include/embread.h
include/embshow.h
include/embsig.h
include/embword.h
include/eplplot/
include/eplplot/disptab.h
include/eplplot/drivers.h
include/eplplot/metadefs.h
include/eplplot/pdf.h
include/eplplot/plConfig.h
include/eplplot/plDevs.h
include/eplplot/plcore.h
include/eplplot/pldebug.h
include/eplplot/pldll.h
include/eplplot/plevent.h
include/eplplot/plfci-type1.h
include/eplplot/plhershey-unicode.h
include/eplplot/plplot.h
include/eplplot/plplotP.h
include/eplplot/plstrm.h
include/eplplot/plunicode-type1.h
include/eplplot/plxwd.h
include/eplplot/ps.h
lib/libajax.a
lib/libajax.la
@lib lib/libajax.so.${LIBajax_VERSION}
lib/libajaxg.a
lib/libajaxg.la
@lib lib/libajaxg.so.${LIBajaxg_VERSION}
lib/libeplplot.a
lib/libeplplot.la
@lib lib/libeplplot.so.${LIBeplplot_VERSION}
lib/libnucleus.a
lib/libnucleus.la
@lib lib/libnucleus.so.${LIBnucleus_VERSION}
share/EMBOSS/
share/EMBOSS/acd/
share/EMBOSS/acd/aaindexextract.acd
share/EMBOSS/acd/abiview.acd
share/EMBOSS/acd/acdc.acd
share/EMBOSS/acd/acdlog.acd
share/EMBOSS/acd/acdpretty.acd
share/EMBOSS/acd/acdtable.acd
share/EMBOSS/acd/acdtrace.acd
share/EMBOSS/acd/acdvalid.acd
share/EMBOSS/acd/ajbad.acd
share/EMBOSS/acd/ajfeatest.acd
share/EMBOSS/acd/ajtest.acd
share/EMBOSS/acd/aligncopy.acd
share/EMBOSS/acd/aligncopypair.acd
share/EMBOSS/acd/antigenic.acd
share/EMBOSS/acd/backtranambig.acd
share/EMBOSS/acd/backtranseq.acd
share/EMBOSS/acd/banana.acd
share/EMBOSS/acd/biosed.acd
share/EMBOSS/acd/btwisted.acd
share/EMBOSS/acd/cai.acd
share/EMBOSS/acd/chaos.acd
share/EMBOSS/acd/charge.acd
share/EMBOSS/acd/checktrans.acd
share/EMBOSS/acd/chips.acd
share/EMBOSS/acd/cirdna.acd
share/EMBOSS/acd/codcmp.acd
share/EMBOSS/acd/codcopy.acd
share/EMBOSS/acd/coderet.acd
share/EMBOSS/acd/codes.english
share/EMBOSS/acd/complex.acd
share/EMBOSS/acd/compseq.acd
share/EMBOSS/acd/cons.acd
share/EMBOSS/acd/consambig.acd
share/EMBOSS/acd/corbatest.acd
share/EMBOSS/acd/cpgplot.acd
share/EMBOSS/acd/cpgreport.acd
share/EMBOSS/acd/cusp.acd
share/EMBOSS/acd/cutgextract.acd
share/EMBOSS/acd/cutseq.acd
share/EMBOSS/acd/dan.acd
share/EMBOSS/acd/dbiblast.acd
share/EMBOSS/acd/dbifasta.acd
share/EMBOSS/acd/dbiflat.acd
share/EMBOSS/acd/dbigcg.acd
share/EMBOSS/acd/dbxfasta.acd
share/EMBOSS/acd/dbxflat.acd
share/EMBOSS/acd/dbxgcg.acd
share/EMBOSS/acd/dbxstat.acd
share/EMBOSS/acd/degapseq.acd
share/EMBOSS/acd/density.acd
share/EMBOSS/acd/descseq.acd
share/EMBOSS/acd/diffseq.acd
share/EMBOSS/acd/digest.acd
share/EMBOSS/acd/distmat.acd
share/EMBOSS/acd/dotmatcher.acd
share/EMBOSS/acd/dotpath.acd
share/EMBOSS/acd/dottup.acd
share/EMBOSS/acd/dreg.acd
share/EMBOSS/acd/edialign.acd
share/EMBOSS/acd/einverted.acd
share/EMBOSS/acd/embossdata.acd
share/EMBOSS/acd/embossversion.acd
share/EMBOSS/acd/emma.acd
share/EMBOSS/acd/emowse.acd
share/EMBOSS/acd/entrails.acd
share/EMBOSS/acd/entret.acd
share/EMBOSS/acd/epestfind.acd
share/EMBOSS/acd/eprimer3.acd
share/EMBOSS/acd/equicktandem.acd
share/EMBOSS/acd/est2genome.acd
share/EMBOSS/acd/etandem.acd
share/EMBOSS/acd/extractalign.acd
share/EMBOSS/acd/extractfeat.acd
share/EMBOSS/acd/extractseq.acd
share/EMBOSS/acd/featcopy.acd
share/EMBOSS/acd/featreport.acd
share/EMBOSS/acd/findkm.acd
share/EMBOSS/acd/freak.acd
share/EMBOSS/acd/fuzznuc.acd
share/EMBOSS/acd/fuzzpro.acd
share/EMBOSS/acd/fuzztran.acd
share/EMBOSS/acd/garnier.acd
share/EMBOSS/acd/geecee.acd
share/EMBOSS/acd/getorf.acd
share/EMBOSS/acd/giep.acd
share/EMBOSS/acd/groups.standard
share/EMBOSS/acd/helixturnhelix.acd
share/EMBOSS/acd/histogramtest.acd
share/EMBOSS/acd/hmoment.acd
share/EMBOSS/acd/iep.acd
share/EMBOSS/acd/infoalign.acd
share/EMBOSS/acd/infoseq.acd
share/EMBOSS/acd/intconv.acd
share/EMBOSS/acd/isochore.acd
share/EMBOSS/acd/jaspextract.acd
share/EMBOSS/acd/jaspscan.acd
share/EMBOSS/acd/keywords.standard
share/EMBOSS/acd/knowntypes.standard
share/EMBOSS/acd/lindna.acd
share/EMBOSS/acd/listor.acd
share/EMBOSS/acd/makenucseq.acd
share/EMBOSS/acd/makeprotseq.acd
share/EMBOSS/acd/marscan.acd
share/EMBOSS/acd/maskambignuc.acd
share/EMBOSS/acd/maskambigprot.acd
share/EMBOSS/acd/maskfeat.acd
share/EMBOSS/acd/maskseq.acd
share/EMBOSS/acd/matcher.acd
share/EMBOSS/acd/megamerger.acd
share/EMBOSS/acd/merger.acd
share/EMBOSS/acd/msbar.acd
share/EMBOSS/acd/mwcontam.acd
share/EMBOSS/acd/mwfilter.acd
share/EMBOSS/acd/needle.acd
share/EMBOSS/acd/newcoils.acd
share/EMBOSS/acd/newcpgreport.acd
share/EMBOSS/acd/newcpgseek.acd
share/EMBOSS/acd/newseq.acd
share/EMBOSS/acd/nohtml.acd
share/EMBOSS/acd/noreturn.acd
share/EMBOSS/acd/nospace.acd
share/EMBOSS/acd/notab.acd
share/EMBOSS/acd/notseq.acd
share/EMBOSS/acd/nthseq.acd
share/EMBOSS/acd/octanol.acd
share/EMBOSS/acd/oddcomp.acd
share/EMBOSS/acd/origsplitter.acd
share/EMBOSS/acd/origunion.acd
share/EMBOSS/acd/palindrome.acd
share/EMBOSS/acd/pasteseq.acd
share/EMBOSS/acd/patmatdb.acd
share/EMBOSS/acd/patmatmotifs.acd
share/EMBOSS/acd/patmattest.acd
share/EMBOSS/acd/pepcoil.acd
share/EMBOSS/acd/pepinfo.acd
share/EMBOSS/acd/pepnet.acd
share/EMBOSS/acd/pepstats.acd
share/EMBOSS/acd/pepwheel.acd
share/EMBOSS/acd/pepwindow.acd
share/EMBOSS/acd/pepwindowall.acd
share/EMBOSS/acd/plotcon.acd
share/EMBOSS/acd/plotorf.acd
share/EMBOSS/acd/polydot.acd
share/EMBOSS/acd/preg.acd
share/EMBOSS/acd/prettyplot.acd
share/EMBOSS/acd/prettyseq.acd
share/EMBOSS/acd/prima.acd
share/EMBOSS/acd/primers.acd
share/EMBOSS/acd/primersearch.acd
share/EMBOSS/acd/printsextract.acd
share/EMBOSS/acd/profit.acd
share/EMBOSS/acd/prophecy.acd
share/EMBOSS/acd/prophet.acd
share/EMBOSS/acd/prosextract.acd
share/EMBOSS/acd/pscan.acd
share/EMBOSS/acd/psiphi.acd
share/EMBOSS/acd/rebaseextract.acd
share/EMBOSS/acd/recoder.acd
share/EMBOSS/acd/redata.acd
share/EMBOSS/acd/remap.acd
share/EMBOSS/acd/restover.acd
share/EMBOSS/acd/restrict.acd
share/EMBOSS/acd/revseq.acd
share/EMBOSS/acd/sections.standard
share/EMBOSS/acd/seealso.acd
share/EMBOSS/acd/seqinfo.acd
share/EMBOSS/acd/seqmatchall.acd
share/EMBOSS/acd/seqret.acd
share/EMBOSS/acd/seqretall.acd
share/EMBOSS/acd/seqretallfeat.acd
share/EMBOSS/acd/seqretset.acd
share/EMBOSS/acd/seqretsingle.acd
share/EMBOSS/acd/seqretsplit.acd
share/EMBOSS/acd/seqrettype.acd
share/EMBOSS/acd/showalign.acd
share/EMBOSS/acd/showdb.acd
share/EMBOSS/acd/showfeat.acd
share/EMBOSS/acd/showorf.acd
share/EMBOSS/acd/showseq.acd
share/EMBOSS/acd/shuffleseq.acd
share/EMBOSS/acd/sigcleave.acd
share/EMBOSS/acd/silent.acd
share/EMBOSS/acd/sirna.acd
share/EMBOSS/acd/sixpack.acd
share/EMBOSS/acd/sizeseq.acd
share/EMBOSS/acd/skipredundant.acd
share/EMBOSS/acd/skipseq.acd
share/EMBOSS/acd/splitter.acd
share/EMBOSS/acd/stretcher.acd
share/EMBOSS/acd/stssearch.acd
share/EMBOSS/acd/supermatcher.acd
share/EMBOSS/acd/syco.acd
share/EMBOSS/acd/tcode.acd
share/EMBOSS/acd/testplot.acd
share/EMBOSS/acd/textsearch.acd
share/EMBOSS/acd/tfextract.acd
share/EMBOSS/acd/tfm.acd
share/EMBOSS/acd/tfscan.acd
share/EMBOSS/acd/tmap.acd
share/EMBOSS/acd/tranalign.acd
share/EMBOSS/acd/transeq.acd
share/EMBOSS/acd/treetypedisplay.acd
share/EMBOSS/acd/trimest.acd
share/EMBOSS/acd/trimseq.acd
share/EMBOSS/acd/twofeat.acd
share/EMBOSS/acd/union.acd
share/EMBOSS/acd/variables.standard
share/EMBOSS/acd/vectorstrip.acd
share/EMBOSS/acd/water.acd
share/EMBOSS/acd/whichdb.acd
share/EMBOSS/acd/wobble.acd
share/EMBOSS/acd/wordcount.acd
share/EMBOSS/acd/wordfinder.acd
share/EMBOSS/acd/wordmatch.acd
share/EMBOSS/acd/wossname.acd
share/EMBOSS/acd/yank.acd
share/EMBOSS/data/
share/EMBOSS/data/AAINDEX/
share/EMBOSS/data/AAINDEX/dummyfile
share/EMBOSS/data/CODONS/
share/EMBOSS/data/CODONS/Cut.index
share/EMBOSS/data/CODONS/Eacc.cut
share/EMBOSS/data/CODONS/Eacica.cut
share/EMBOSS/data/CODONS/Eadenovirus5.cut
share/EMBOSS/data/CODONS/Eadenovirus7.cut
share/EMBOSS/data/CODONS/Eagrtu.cut
share/EMBOSS/data/CODONS/Eaidlav.cut
share/EMBOSS/data/CODONS/Eanasp.cut
share/EMBOSS/data/CODONS/Eani.cut
share/EMBOSS/data/CODONS/Eani_h.cut
share/EMBOSS/data/CODONS/Eanidmit.cut
share/EMBOSS/data/CODONS/Earath.cut
share/EMBOSS/data/CODONS/Easn.cut
share/EMBOSS/data/CODONS/Eath.cut
share/EMBOSS/data/CODONS/Eatu.cut
share/EMBOSS/data/CODONS/Eavi.cut
share/EMBOSS/data/CODONS/Eazovi.cut
share/EMBOSS/data/CODONS/Ebacme.cut
share/EMBOSS/data/CODONS/Ebacst.cut
share/EMBOSS/data/CODONS/Ebacsu.cut
share/EMBOSS/data/CODONS/Ebacsu_high.cut
share/EMBOSS/data/CODONS/Ebja.cut
share/EMBOSS/data/CODONS/Ebly.cut
share/EMBOSS/data/CODONS/Ebme.cut
share/EMBOSS/data/CODONS/Ebmo.cut
share/EMBOSS/data/CODONS/Ebna.cut
share/EMBOSS/data/CODONS/Ebommo.cut
share/EMBOSS/data/CODONS/Ebov.cut
share/EMBOSS/data/CODONS/Ebovin.cut
share/EMBOSS/data/CODONS/Ebovsp.cut
share/EMBOSS/data/CODONS/Ebpphx.cut
share/EMBOSS/data/CODONS/Ebraja.cut
share/EMBOSS/data/CODONS/Ebrana.cut
share/EMBOSS/data/CODONS/Ebrare.cut
share/EMBOSS/data/CODONS/Ebst.cut
share/EMBOSS/data/CODONS/Ebsu.cut
share/EMBOSS/data/CODONS/Ebsu_h.cut
share/EMBOSS/data/CODONS/Ecac.cut
share/EMBOSS/data/CODONS/Ecaeel.cut
share/EMBOSS/data/CODONS/Ecal.cut
share/EMBOSS/data/CODONS/Ecanal.cut
share/EMBOSS/data/CODONS/Ecanfa.cut
share/EMBOSS/data/CODONS/Ecaucr.cut
share/EMBOSS/data/CODONS/Eccr.cut
share/EMBOSS/data/CODONS/Ecel.cut
share/EMBOSS/data/CODONS/Echi.cut
share/EMBOSS/data/CODONS/Echick.cut
share/EMBOSS/data/CODONS/Echicken.cut
share/EMBOSS/data/CODONS/Echisp.cut
share/EMBOSS/data/CODONS/Echk.cut
share/EMBOSS/data/CODONS/Echlre.cut
share/EMBOSS/data/CODONS/Echltr.cut
share/EMBOSS/data/CODONS/Echmp.cut
share/EMBOSS/data/CODONS/Echnt.cut
share/EMBOSS/data/CODONS/Echos.cut
share/EMBOSS/data/CODONS/Echzm.cut
share/EMBOSS/data/CODONS/Echzmrubp.cut
share/EMBOSS/data/CODONS/Ecloab.cut
share/EMBOSS/data/CODONS/Ecpx.cut
share/EMBOSS/data/CODONS/Ecre.cut
share/EMBOSS/data/CODONS/Ecrigr.cut
share/EMBOSS/data/CODONS/Ecrisp.cut
share/EMBOSS/data/CODONS/Ectr.cut
share/EMBOSS/data/CODONS/Ecyapa.cut
share/EMBOSS/data/CODONS/Edayhoff.cut
share/EMBOSS/data/CODONS/Eddi.cut
share/EMBOSS/data/CODONS/Eddi_h.cut
share/EMBOSS/data/CODONS/Edicdi.cut
share/EMBOSS/data/CODONS/Edicdi_high.cut
share/EMBOSS/data/CODONS/Edog.cut
share/EMBOSS/data/CODONS/Edro.cut
share/EMBOSS/data/CODONS/Edro_h.cut
share/EMBOSS/data/CODONS/Edrome.cut
share/EMBOSS/data/CODONS/Edrome_high.cut
share/EMBOSS/data/CODONS/Edrosophila.cut
share/EMBOSS/data/CODONS/Eeca.cut
share/EMBOSS/data/CODONS/Eeco.cut
share/EMBOSS/data/CODONS/Eeco_h.cut
share/EMBOSS/data/CODONS/Eecoli.cut
share/EMBOSS/data/CODONS/Eecoli_high.cut
share/EMBOSS/data/CODONS/Eemeni.cut
share/EMBOSS/data/CODONS/Eemeni_high.cut
share/EMBOSS/data/CODONS/Eemeni_mit.cut
share/EMBOSS/data/CODONS/Eerwct.cut
share/EMBOSS/data/CODONS/Ef1.cut
share/EMBOSS/data/CODONS/Efish.cut
share/EMBOSS/data/CODONS/Efmdvpolyp.cut
share/EMBOSS/data/CODONS/Ehaein.cut
share/EMBOSS/data/CODONS/Ehalma.cut
share/EMBOSS/data/CODONS/Ehalsa.cut
share/EMBOSS/data/CODONS/Eham.cut
share/EMBOSS/data/CODONS/Ehha.cut
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share/EMBOSS/jemboss/org/
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share/EMBOSS/jemboss/org/emboss/jemboss/Jemboss.java
share/EMBOSS/jemboss/org/emboss/jemboss/JembossJarUtil.java
share/EMBOSS/jemboss/org/emboss/jemboss/JembossLogo.java
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share/EMBOSS/jemboss/org/emboss/jemboss/draw/Block.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/DNADraw.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/EmbossCirdnaReader.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/GeneticMarker.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/LineAttribute.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/PrintDNAImage.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/RestrictionEnzyme.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/Ticks.java
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share/EMBOSS/jemboss/org/emboss/jemboss/editor/AlignApplet.java
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share/EMBOSS/jemboss/org/emboss/jemboss/graphics/Graph2DPlot.java
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share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/CutNPasteTextArea.java
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share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup/Database.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup/ProgList.java
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share/EMBOSS/jemboss/org/emboss/jemboss/parser/AcdFunResolve.java
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share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd/ApplicationParam.java
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share/EMBOSS/jemboss/org/emboss/jemboss/programs/BatchUpdateTimer.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/JembossProcess.java
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share/EMBOSS/jemboss/org/emboss/jemboss/programs/RunEmbossApplication.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/RunEmbossApplication2.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/
share/EMBOSS/jemboss/org/emboss/jemboss/server/AppendToLogFileThread.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossAuthServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossFileAuthServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossFileServer.java
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share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossThread.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/TestPrivateServer.java
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share/EMBOSS/jemboss/org/emboss/jemboss/soap/AuthPopup.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/CallAjax.java
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share/EMBOSS/jemboss/org/emboss/jemboss/soap/FileRoots.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetACD.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetHelp.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetWossname.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/JembossRun.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/JembossSoapException.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/MakeFileSafe.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/PendingResults.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/PrivateRequest.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/PublicRequest.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/ServerSetup.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/ShowDB.java
share/EMBOSS/jemboss/readme.html
share/EMBOSS/jemboss/resources/
share/EMBOSS/jemboss/resources/filemgr.html
share/EMBOSS/jemboss/resources/jemboss.properties
share/EMBOSS/jemboss/resources/readme.html
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share/EMBOSS/jemboss/resources/readmeDNADraw.html
share/EMBOSS/jemboss/resources/results.html
share/EMBOSS/jemboss/resources/seqList.html
share/EMBOSS/jemboss/resources/version
share/EMBOSS/jemboss/runJemboss.sh
share/EMBOSS/jemboss/utils/
share/EMBOSS/jemboss/utils/README
share/EMBOSS/jemboss/utils/install-jemboss-server.sh
share/EMBOSS/jemboss/utils/keys.sh
share/EMBOSS/jemboss/utils/makeFileManagerJNLP.sh
share/EMBOSS/jemboss/utils/makeJNLP.sh
share/EMBOSS/jemboss/utils/makeJar.csh
share/EMBOSS/jemboss/utils/template.html
share/EMBOSS/plstnd5.fnt
share/EMBOSS/plxtnd5.fnt
share/EMBOSS/test/
share/EMBOSS/test/data/
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share/EMBOSS/test/data/aaindex1.test
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share/EMBOSS/test/data/aligna.prot
share/EMBOSS/test/data/alignapart.dna
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share/EMBOSS/test/data/alignb.dna
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share/EMBOSS/test/data/cutg.codon
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share/EMBOSS/test/data/z83307.seq
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share/doc/EMBOSS/programs/text/matcher.txt
share/doc/EMBOSS/programs/text/megamerger.txt
share/doc/EMBOSS/programs/text/merger.txt
share/doc/EMBOSS/programs/text/msbar.txt
share/doc/EMBOSS/programs/text/mwcontam.txt
share/doc/EMBOSS/programs/text/mwfilter.txt
share/doc/EMBOSS/programs/text/needle.txt
share/doc/EMBOSS/programs/text/newcpgreport.txt
share/doc/EMBOSS/programs/text/newcpgseek.txt
share/doc/EMBOSS/programs/text/newseq.txt
share/doc/EMBOSS/programs/text/nohtml.txt
share/doc/EMBOSS/programs/text/noreturn.txt
share/doc/EMBOSS/programs/text/nospace.txt
share/doc/EMBOSS/programs/text/notab.txt
share/doc/EMBOSS/programs/text/notseq.txt
share/doc/EMBOSS/programs/text/nthseq.txt
share/doc/EMBOSS/programs/text/octanol.txt
share/doc/EMBOSS/programs/text/oddcomp.txt
share/doc/EMBOSS/programs/text/palindrome.txt
share/doc/EMBOSS/programs/text/pasteseq.txt
share/doc/EMBOSS/programs/text/patmatdb.txt
share/doc/EMBOSS/programs/text/patmatmotifs.txt
share/doc/EMBOSS/programs/text/pepcoil.txt
share/doc/EMBOSS/programs/text/pepinfo.txt
share/doc/EMBOSS/programs/text/pepnet.txt
share/doc/EMBOSS/programs/text/pepstats.txt
share/doc/EMBOSS/programs/text/pepwheel.txt
share/doc/EMBOSS/programs/text/pepwindow.txt
share/doc/EMBOSS/programs/text/pepwindowall.txt
share/doc/EMBOSS/programs/text/plotcon.txt
share/doc/EMBOSS/programs/text/plotorf.txt
share/doc/EMBOSS/programs/text/polydot.txt
share/doc/EMBOSS/programs/text/preg.txt
share/doc/EMBOSS/programs/text/prettyplot.txt
share/doc/EMBOSS/programs/text/prettyseq.txt
share/doc/EMBOSS/programs/text/primersearch.txt
share/doc/EMBOSS/programs/text/printsextract.txt
share/doc/EMBOSS/programs/text/profit.txt
share/doc/EMBOSS/programs/text/prophecy.txt
share/doc/EMBOSS/programs/text/prophet.txt
share/doc/EMBOSS/programs/text/prosextract.txt
share/doc/EMBOSS/programs/text/pscan.txt
share/doc/EMBOSS/programs/text/psiphi.txt
share/doc/EMBOSS/programs/text/rebaseextract.txt
share/doc/EMBOSS/programs/text/recoder.txt
share/doc/EMBOSS/programs/text/redata.txt
share/doc/EMBOSS/programs/text/remap.txt
share/doc/EMBOSS/programs/text/restover.txt
share/doc/EMBOSS/programs/text/restrict.txt
share/doc/EMBOSS/programs/text/revseq.txt
share/doc/EMBOSS/programs/text/seealso.txt
share/doc/EMBOSS/programs/text/seqmatchall.txt
share/doc/EMBOSS/programs/text/seqret.txt
share/doc/EMBOSS/programs/text/seqretsplit.txt
share/doc/EMBOSS/programs/text/showalign.txt
share/doc/EMBOSS/programs/text/showdb.txt
share/doc/EMBOSS/programs/text/showfeat.txt
share/doc/EMBOSS/programs/text/showorf.txt
share/doc/EMBOSS/programs/text/showseq.txt
share/doc/EMBOSS/programs/text/shuffleseq.txt
share/doc/EMBOSS/programs/text/sigcleave.txt
share/doc/EMBOSS/programs/text/silent.txt
share/doc/EMBOSS/programs/text/sirna.txt
share/doc/EMBOSS/programs/text/sixpack.txt
share/doc/EMBOSS/programs/text/sizeseq.txt
share/doc/EMBOSS/programs/text/skipredundant.txt
share/doc/EMBOSS/programs/text/skipseq.txt
share/doc/EMBOSS/programs/text/splitter.txt
share/doc/EMBOSS/programs/text/stretcher.txt
share/doc/EMBOSS/programs/text/stssearch.txt
share/doc/EMBOSS/programs/text/supermatcher.txt
share/doc/EMBOSS/programs/text/syco.txt
share/doc/EMBOSS/programs/text/tcode.txt
share/doc/EMBOSS/programs/text/textsearch.txt
share/doc/EMBOSS/programs/text/tfextract.txt
share/doc/EMBOSS/programs/text/tfm.txt
share/doc/EMBOSS/programs/text/tfscan.txt
share/doc/EMBOSS/programs/text/tmap.txt
share/doc/EMBOSS/programs/text/tranalign.txt
share/doc/EMBOSS/programs/text/transeq.txt
share/doc/EMBOSS/programs/text/trimest.txt
share/doc/EMBOSS/programs/text/trimseq.txt
share/doc/EMBOSS/programs/text/trimspace.txt
share/doc/EMBOSS/programs/text/twofeat.txt
share/doc/EMBOSS/programs/text/union.txt
share/doc/EMBOSS/programs/text/vectorstrip.txt
share/doc/EMBOSS/programs/text/water.txt
share/doc/EMBOSS/programs/text/whichdb.txt
share/doc/EMBOSS/programs/text/wobble.txt
share/doc/EMBOSS/programs/text/wordcount.txt
share/doc/EMBOSS/programs/text/wordfinder.txt
share/doc/EMBOSS/programs/text/wordmatch.txt
share/doc/EMBOSS/programs/text/wossname.txt
share/doc/EMBOSS/programs/text/yank.txt
share/doc/EMBOSS/tutorials/
share/doc/EMBOSS/tutorials/emboss-gcg.ppt
share/doc/EMBOSS/tutorials/emboss-interfaces.ppt
share/doc/EMBOSS/tutorials/emboss-talk.ppt
share/doc/EMBOSS/tutorials/emboss_tut.tar.gz