ood-ports-lbsd-fork1/biology/bioperl/pkg/PLIST

@comment $OpenBSD: PLIST,v 1.5 2015/04/03 09:46:53 jasper Exp $
bin/bp_aacomp.pl
bin/bp_biofetch_genbank_proxy.pl
bin/bp_bioflat_index.pl
bin/bp_biogetseq.pl
bin/bp_blast2tree.pl
bin/bp_bulk_load_gff.pl
bin/bp_chaos_plot.pl
bin/bp_classify_hits_kingdom.pl
bin/bp_composite_LD.pl
bin/bp_das_server.pl
bin/bp_dbsplit.pl
bin/bp_download_query_genbank.pl
bin/bp_extract_feature_seq.pl
bin/bp_fast_load_gff.pl
bin/bp_fastam9_to_table.pl
bin/bp_fetch.pl
bin/bp_filter_search.pl
bin/bp_flanks.pl
bin/bp_gccalc.pl
bin/bp_genbank2gff.pl
bin/bp_genbank2gff3.pl
bin/bp_generate_histogram.pl
bin/bp_heterogeneity_test.pl
bin/bp_hivq.pl
bin/bp_hmmer_to_table.pl
bin/bp_index.pl
bin/bp_load_gff.pl
bin/bp_local_taxonomydb_query.pl
bin/bp_make_mrna_protein.pl
bin/bp_mask_by_search.pl
bin/bp_meta_gff.pl
bin/bp_mrtrans.pl
bin/bp_mutate.pl
bin/bp_netinstall.pl
bin/bp_nexus2nh.pl
bin/bp_nrdb.pl
bin/bp_oligo_count.pl
bin/bp_pairwise_kaks.pl
bin/bp_parse_hmmsearch.pl
bin/bp_process_gadfly.pl
bin/bp_process_sgd.pl
bin/bp_process_wormbase.pl
bin/bp_query_entrez_taxa.pl
bin/bp_remote_blast.pl
bin/bp_revtrans-motif.pl
bin/bp_search2BSML.pl
bin/bp_search2alnblocks.pl
bin/bp_search2gff.pl
bin/bp_search2table.pl
bin/bp_search2tribe.pl
bin/bp_seq_length.pl
bin/bp_seqconvert.pl
bin/bp_seqcut.pl
bin/bp_seqfeature_delete.pl
bin/bp_seqfeature_gff3.pl
bin/bp_seqfeature_load.pl
bin/bp_seqpart.pl
bin/bp_seqret.pl
bin/bp_seqretsplit.pl
bin/bp_split_seq.pl
bin/bp_sreformat.pl
bin/bp_taxid4species.pl
bin/bp_taxonomy2tree.pl
bin/bp_translate_seq.pl
bin/bp_tree2pag.pl
bin/bp_unflatten_seq.pl
${P5SITE}/Bio/
${P5SITE}/Bio/Align/
${P5SITE}/Bio/Align/AlignI.pm
${P5SITE}/Bio/Align/DNAStatistics.pm
${P5SITE}/Bio/Align/Graphics.pm
${P5SITE}/Bio/Align/PairwiseStatistics.pm
${P5SITE}/Bio/Align/ProteinStatistics.pm
${P5SITE}/Bio/Align/StatisticsI.pm
${P5SITE}/Bio/Align/Utilities.pm
${P5SITE}/Bio/AlignIO/
${P5SITE}/Bio/AlignIO.pm
${P5SITE}/Bio/AlignIO/Handler/
${P5SITE}/Bio/AlignIO/Handler/GenericAlignHandler.pm
${P5SITE}/Bio/AlignIO/arp.pm
${P5SITE}/Bio/AlignIO/bl2seq.pm
${P5SITE}/Bio/AlignIO/clustalw.pm
${P5SITE}/Bio/AlignIO/emboss.pm
${P5SITE}/Bio/AlignIO/fasta.pm
${P5SITE}/Bio/AlignIO/largemultifasta.pm
${P5SITE}/Bio/AlignIO/maf.pm
${P5SITE}/Bio/AlignIO/mase.pm
${P5SITE}/Bio/AlignIO/mega.pm
${P5SITE}/Bio/AlignIO/meme.pm
${P5SITE}/Bio/AlignIO/metafasta.pm
${P5SITE}/Bio/AlignIO/msf.pm
${P5SITE}/Bio/AlignIO/nexml.pm
${P5SITE}/Bio/AlignIO/nexus.pm
${P5SITE}/Bio/AlignIO/pfam.pm
${P5SITE}/Bio/AlignIO/phylip.pm
${P5SITE}/Bio/AlignIO/po.pm
${P5SITE}/Bio/AlignIO/proda.pm
${P5SITE}/Bio/AlignIO/prodom.pm
${P5SITE}/Bio/AlignIO/psi.pm
${P5SITE}/Bio/AlignIO/selex.pm
${P5SITE}/Bio/AlignIO/stockholm.pm
${P5SITE}/Bio/AlignIO/xmfa.pm
${P5SITE}/Bio/AnalysisI.pm
${P5SITE}/Bio/AnalysisParserI.pm
${P5SITE}/Bio/AnalysisResultI.pm
${P5SITE}/Bio/AnnotatableI.pm
${P5SITE}/Bio/Annotation/
${P5SITE}/Bio/Annotation/AnnotationFactory.pm
${P5SITE}/Bio/Annotation/Collection.pm
${P5SITE}/Bio/Annotation/Comment.pm
${P5SITE}/Bio/Annotation/DBLink.pm
${P5SITE}/Bio/Annotation/OntologyTerm.pm
${P5SITE}/Bio/Annotation/Reference.pm
${P5SITE}/Bio/Annotation/Relation.pm
${P5SITE}/Bio/Annotation/SimpleValue.pm
${P5SITE}/Bio/Annotation/StructuredValue.pm
${P5SITE}/Bio/Annotation/TagTree.pm
${P5SITE}/Bio/Annotation/Target.pm
${P5SITE}/Bio/Annotation/Tree.pm
${P5SITE}/Bio/Annotation/TypeManager.pm
${P5SITE}/Bio/AnnotationCollectionI.pm
${P5SITE}/Bio/AnnotationI.pm
${P5SITE}/Bio/Assembly/
${P5SITE}/Bio/Assembly/Contig.pm
${P5SITE}/Bio/Assembly/ContigAnalysis.pm
${P5SITE}/Bio/Assembly/IO/
${P5SITE}/Bio/Assembly/IO.pm
${P5SITE}/Bio/Assembly/IO/ace.pm
${P5SITE}/Bio/Assembly/IO/bowtie.pm
${P5SITE}/Bio/Assembly/IO/maq.pm
${P5SITE}/Bio/Assembly/IO/phrap.pm
${P5SITE}/Bio/Assembly/IO/sam.pm
${P5SITE}/Bio/Assembly/IO/tigr.pm
${P5SITE}/Bio/Assembly/Scaffold.pm
${P5SITE}/Bio/Assembly/ScaffoldI.pm
${P5SITE}/Bio/Assembly/Singlet.pm
${P5SITE}/Bio/Assembly/Tools/
${P5SITE}/Bio/Assembly/Tools/ContigSpectrum.pm
${P5SITE}/Bio/Cluster/
${P5SITE}/Bio/Cluster/ClusterFactory.pm
${P5SITE}/Bio/Cluster/FamilyI.pm
${P5SITE}/Bio/Cluster/SequenceFamily.pm
${P5SITE}/Bio/Cluster/UniGene.pm
${P5SITE}/Bio/Cluster/UniGeneI.pm
${P5SITE}/Bio/ClusterI.pm
${P5SITE}/Bio/ClusterIO/
${P5SITE}/Bio/ClusterIO.pm
${P5SITE}/Bio/ClusterIO/dbsnp.pm
${P5SITE}/Bio/ClusterIO/unigene.pm
${P5SITE}/Bio/CodonUsage/
${P5SITE}/Bio/CodonUsage/IO.pm
${P5SITE}/Bio/CodonUsage/Table.pm
${P5SITE}/Bio/Coordinate/
${P5SITE}/Bio/Coordinate/Chain.pm
${P5SITE}/Bio/Coordinate/Collection.pm
${P5SITE}/Bio/Coordinate/ExtrapolatingPair.pm
${P5SITE}/Bio/Coordinate/GeneMapper.pm
${P5SITE}/Bio/Coordinate/Graph.pm
${P5SITE}/Bio/Coordinate/MapperI.pm
${P5SITE}/Bio/Coordinate/Pair.pm
${P5SITE}/Bio/Coordinate/Result/
${P5SITE}/Bio/Coordinate/Result.pm
${P5SITE}/Bio/Coordinate/Result/Gap.pm
${P5SITE}/Bio/Coordinate/Result/Match.pm
${P5SITE}/Bio/Coordinate/ResultI.pm
${P5SITE}/Bio/Coordinate/Utils.pm
${P5SITE}/Bio/DB/
${P5SITE}/Bio/DB/Ace.pm
${P5SITE}/Bio/DB/BioFetch.pm
${P5SITE}/Bio/DB/CUTG.pm
${P5SITE}/Bio/DB/DBFetch.pm
${P5SITE}/Bio/DB/EMBL.pm
${P5SITE}/Bio/DB/EntrezGene.pm
${P5SITE}/Bio/DB/Expression/
${P5SITE}/Bio/DB/Expression.pm
${P5SITE}/Bio/DB/Expression/geo.pm
${P5SITE}/Bio/DB/Failover.pm
${P5SITE}/Bio/DB/Fasta.pm
${P5SITE}/Bio/DB/FileCache.pm
${P5SITE}/Bio/DB/Flat/
${P5SITE}/Bio/DB/Flat.pm
${P5SITE}/Bio/DB/Flat/BDB/
${P5SITE}/Bio/DB/Flat/BDB.pm
${P5SITE}/Bio/DB/Flat/BDB/embl.pm
${P5SITE}/Bio/DB/Flat/BDB/fasta.pm
${P5SITE}/Bio/DB/Flat/BDB/genbank.pm
${P5SITE}/Bio/DB/Flat/BDB/swiss.pm
${P5SITE}/Bio/DB/Flat/BinarySearch.pm
${P5SITE}/Bio/DB/GFF/
${P5SITE}/Bio/DB/GFF.pm
${P5SITE}/Bio/DB/GFF/Adaptor/
${P5SITE}/Bio/DB/GFF/Adaptor/ace.pm
${P5SITE}/Bio/DB/GFF/Adaptor/berkeleydb/
${P5SITE}/Bio/DB/GFF/Adaptor/berkeleydb.pm
${P5SITE}/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm
${P5SITE}/Bio/DB/GFF/Adaptor/biofetch.pm
${P5SITE}/Bio/DB/GFF/Adaptor/biofetch_oracle.pm
${P5SITE}/Bio/DB/GFF/Adaptor/dbi/
${P5SITE}/Bio/DB/GFF/Adaptor/dbi.pm
${P5SITE}/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
${P5SITE}/Bio/DB/GFF/Adaptor/dbi/iterator.pm
${P5SITE}/Bio/DB/GFF/Adaptor/dbi/mysql.pm
${P5SITE}/Bio/DB/GFF/Adaptor/dbi/mysqlace.pm
${P5SITE}/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm
${P5SITE}/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
${P5SITE}/Bio/DB/GFF/Adaptor/dbi/oracle.pm
${P5SITE}/Bio/DB/GFF/Adaptor/dbi/oracleace.pm
${P5SITE}/Bio/DB/GFF/Adaptor/dbi/pg.pm
${P5SITE}/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm
${P5SITE}/Bio/DB/GFF/Adaptor/memory/
${P5SITE}/Bio/DB/GFF/Adaptor/memory.pm
${P5SITE}/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm
${P5SITE}/Bio/DB/GFF/Adaptor/memory/iterator.pm
${P5SITE}/Bio/DB/GFF/Aggregator/
${P5SITE}/Bio/DB/GFF/Aggregator.pm
${P5SITE}/Bio/DB/GFF/Aggregator/alignment.pm
${P5SITE}/Bio/DB/GFF/Aggregator/clone.pm
${P5SITE}/Bio/DB/GFF/Aggregator/coding.pm
${P5SITE}/Bio/DB/GFF/Aggregator/gene.pm
${P5SITE}/Bio/DB/GFF/Aggregator/match.pm
${P5SITE}/Bio/DB/GFF/Aggregator/none.pm
${P5SITE}/Bio/DB/GFF/Aggregator/orf.pm
${P5SITE}/Bio/DB/GFF/Aggregator/processed_transcript.pm
${P5SITE}/Bio/DB/GFF/Aggregator/so_transcript.pm
${P5SITE}/Bio/DB/GFF/Aggregator/transcript.pm
${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_acembly.pm
${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm
${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_genscan.pm
${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_refgene.pm
${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm
${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm
${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_softberry.pm
${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm
${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_unigene.pm
${P5SITE}/Bio/DB/GFF/Featname.pm
${P5SITE}/Bio/DB/GFF/Feature.pm
${P5SITE}/Bio/DB/GFF/Homol.pm
${P5SITE}/Bio/DB/GFF/RelSegment.pm
${P5SITE}/Bio/DB/GFF/Segment.pm
${P5SITE}/Bio/DB/GFF/Typename.pm
${P5SITE}/Bio/DB/GFF/Util/
${P5SITE}/Bio/DB/GFF/Util/Binning.pm
${P5SITE}/Bio/DB/GFF/Util/Rearrange.pm
${P5SITE}/Bio/DB/GenBank.pm
${P5SITE}/Bio/DB/GenPept.pm
${P5SITE}/Bio/DB/GenericWebAgent.pm
${P5SITE}/Bio/DB/HIV/
${P5SITE}/Bio/DB/HIV.pm
${P5SITE}/Bio/DB/HIV/HIVAnnotProcessor.pm
${P5SITE}/Bio/DB/HIV/HIVQueryHelper.pm
${P5SITE}/Bio/DB/HIV/lanl-schema.xml
${P5SITE}/Bio/DB/InMemoryCache.pm
${P5SITE}/Bio/DB/IndexedBase.pm
${P5SITE}/Bio/DB/LocationI.pm
${P5SITE}/Bio/DB/MeSH.pm
${P5SITE}/Bio/DB/NCBIHelper.pm
${P5SITE}/Bio/DB/Qual.pm
${P5SITE}/Bio/DB/Query/
${P5SITE}/Bio/DB/Query/GenBank.pm
${P5SITE}/Bio/DB/Query/HIVQuery.pm
${P5SITE}/Bio/DB/Query/WebQuery.pm
${P5SITE}/Bio/DB/QueryI.pm
${P5SITE}/Bio/DB/RandomAccessI.pm
${P5SITE}/Bio/DB/RefSeq.pm
${P5SITE}/Bio/DB/ReferenceI.pm
${P5SITE}/Bio/DB/Registry.pm
${P5SITE}/Bio/DB/SeqFeature/
${P5SITE}/Bio/DB/SeqFeature.pm
${P5SITE}/Bio/DB/SeqFeature/NormalizedFeature.pm
${P5SITE}/Bio/DB/SeqFeature/NormalizedFeatureI.pm
${P5SITE}/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm
${P5SITE}/Bio/DB/SeqFeature/Segment.pm
${P5SITE}/Bio/DB/SeqFeature/Store/
${P5SITE}/Bio/DB/SeqFeature/Store.pm
${P5SITE}/Bio/DB/SeqFeature/Store/DBI/
${P5SITE}/Bio/DB/SeqFeature/Store/DBI/Iterator.pm
${P5SITE}/Bio/DB/SeqFeature/Store/DBI/Pg.pm
${P5SITE}/Bio/DB/SeqFeature/Store/DBI/SQLite.pm
${P5SITE}/Bio/DB/SeqFeature/Store/DBI/mysql.pm
${P5SITE}/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
${P5SITE}/Bio/DB/SeqFeature/Store/GFF2Loader.pm
${P5SITE}/Bio/DB/SeqFeature/Store/GFF3Loader.pm
${P5SITE}/Bio/DB/SeqFeature/Store/LoadHelper.pm
${P5SITE}/Bio/DB/SeqFeature/Store/Loader.pm
${P5SITE}/Bio/DB/SeqFeature/Store/bdb.pm
${P5SITE}/Bio/DB/SeqFeature/Store/berkeleydb.pm
${P5SITE}/Bio/DB/SeqFeature/Store/berkeleydb3.pm
${P5SITE}/Bio/DB/SeqFeature/Store/memory.pm
${P5SITE}/Bio/DB/SeqHound.pm
${P5SITE}/Bio/DB/SeqI.pm
${P5SITE}/Bio/DB/SeqVersion/
${P5SITE}/Bio/DB/SeqVersion.pm
${P5SITE}/Bio/DB/SeqVersion/gi.pm
${P5SITE}/Bio/DB/SwissProt.pm
${P5SITE}/Bio/DB/TFBS/
${P5SITE}/Bio/DB/TFBS.pm
${P5SITE}/Bio/DB/TFBS/transfac_pro.pm
${P5SITE}/Bio/DB/Taxonomy/
${P5SITE}/Bio/DB/Taxonomy.pm
${P5SITE}/Bio/DB/Taxonomy/entrez.pm
${P5SITE}/Bio/DB/Taxonomy/flatfile.pm
${P5SITE}/Bio/DB/Taxonomy/greengenes.pm
${P5SITE}/Bio/DB/Taxonomy/list.pm
${P5SITE}/Bio/DB/Taxonomy/silva.pm
${P5SITE}/Bio/DB/Universal.pm
${P5SITE}/Bio/DB/UpdateableSeqI.pm
${P5SITE}/Bio/DB/WebDBSeqI.pm
${P5SITE}/Bio/DBLinkContainerI.pm
${P5SITE}/Bio/Das/
${P5SITE}/Bio/Das/FeatureTypeI.pm
${P5SITE}/Bio/Das/SegmentI.pm
${P5SITE}/Bio/DasI.pm
${P5SITE}/Bio/DescribableI.pm
${P5SITE}/Bio/Draw/
${P5SITE}/Bio/Draw/Pictogram.pm
${P5SITE}/Bio/Event/
${P5SITE}/Bio/Event/EventGeneratorI.pm
${P5SITE}/Bio/Event/EventHandlerI.pm
${P5SITE}/Bio/Factory/
${P5SITE}/Bio/Factory/AnalysisI.pm
${P5SITE}/Bio/Factory/ApplicationFactoryI.pm
${P5SITE}/Bio/Factory/DriverFactory.pm
${P5SITE}/Bio/Factory/FTLocationFactory.pm
${P5SITE}/Bio/Factory/LocationFactoryI.pm
${P5SITE}/Bio/Factory/MapFactoryI.pm
${P5SITE}/Bio/Factory/ObjectBuilderI.pm
${P5SITE}/Bio/Factory/ObjectFactory.pm
${P5SITE}/Bio/Factory/ObjectFactoryI.pm
${P5SITE}/Bio/Factory/SeqAnalysisParserFactory.pm
${P5SITE}/Bio/Factory/SeqAnalysisParserFactoryI.pm
${P5SITE}/Bio/Factory/SequenceFactoryI.pm
${P5SITE}/Bio/Factory/SequenceProcessorI.pm
${P5SITE}/Bio/Factory/SequenceStreamI.pm
${P5SITE}/Bio/Factory/TreeFactoryI.pm
${P5SITE}/Bio/FeatureHolderI.pm
${P5SITE}/Bio/HandlerBaseI.pm
${P5SITE}/Bio/IdCollectionI.pm
${P5SITE}/Bio/IdentifiableI.pm
${P5SITE}/Bio/Index/
${P5SITE}/Bio/Index/Abstract.pm
${P5SITE}/Bio/Index/AbstractSeq.pm
${P5SITE}/Bio/Index/Blast.pm
${P5SITE}/Bio/Index/BlastTable.pm
${P5SITE}/Bio/Index/EMBL.pm
${P5SITE}/Bio/Index/Fasta.pm
${P5SITE}/Bio/Index/Fastq.pm
${P5SITE}/Bio/Index/GenBank.pm
${P5SITE}/Bio/Index/Hmmer.pm
${P5SITE}/Bio/Index/Qual.pm
${P5SITE}/Bio/Index/Stockholm.pm
${P5SITE}/Bio/Index/SwissPfam.pm
${P5SITE}/Bio/Index/Swissprot.pm
${P5SITE}/Bio/LiveSeq/
${P5SITE}/Bio/LiveSeq/AARange.pm
${P5SITE}/Bio/LiveSeq/Chain.pm
${P5SITE}/Bio/LiveSeq/ChainI.pm
${P5SITE}/Bio/LiveSeq/DNA.pm
${P5SITE}/Bio/LiveSeq/Exon.pm
${P5SITE}/Bio/LiveSeq/Gene.pm
${P5SITE}/Bio/LiveSeq/IO/
${P5SITE}/Bio/LiveSeq/IO/BioPerl.pm
${P5SITE}/Bio/LiveSeq/IO/Loader.pm
${P5SITE}/Bio/LiveSeq/Intron.pm
${P5SITE}/Bio/LiveSeq/Mutation.pm
${P5SITE}/Bio/LiveSeq/Mutator.pm
${P5SITE}/Bio/LiveSeq/Prim_Transcript.pm
${P5SITE}/Bio/LiveSeq/Range.pm
${P5SITE}/Bio/LiveSeq/Repeat_Region.pm
${P5SITE}/Bio/LiveSeq/Repeat_Unit.pm
${P5SITE}/Bio/LiveSeq/SeqI.pm
${P5SITE}/Bio/LiveSeq/Transcript.pm
${P5SITE}/Bio/LiveSeq/Translation.pm
${P5SITE}/Bio/LocatableSeq.pm
${P5SITE}/Bio/Location/
${P5SITE}/Bio/Location/Atomic.pm
${P5SITE}/Bio/Location/AvWithinCoordPolicy.pm
${P5SITE}/Bio/Location/CoordinatePolicyI.pm
${P5SITE}/Bio/Location/Fuzzy.pm
${P5SITE}/Bio/Location/FuzzyLocationI.pm
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${P5SITE}/Bio/Location/Split.pm
${P5SITE}/Bio/Location/SplitLocationI.pm
${P5SITE}/Bio/Location/WidestCoordPolicy.pm
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${P5SITE}/Bio/Map/
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${P5SITE}/Bio/Map/Contig.pm
${P5SITE}/Bio/Map/CytoMap.pm
${P5SITE}/Bio/Map/CytoMarker.pm
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${P5SITE}/Bio/Map/OrderedPosition.pm
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${P5SITE}/Bio/Map/Physical.pm
${P5SITE}/Bio/Map/Position.pm
${P5SITE}/Bio/Map/PositionHandler.pm
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${P5SITE}/Bio/Map/Prediction.pm
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${P5SITE}/Bio/Map/SimpleMap.pm
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${P5SITE}/Bio/MapIO/
${P5SITE}/Bio/MapIO.pm
${P5SITE}/Bio/MapIO/fpc.pm
${P5SITE}/Bio/MapIO/mapmaker.pm
${P5SITE}/Bio/Matrix/
${P5SITE}/Bio/Matrix/Generic.pm
${P5SITE}/Bio/Matrix/IO/
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${P5SITE}/Bio/Matrix/IO/mlagan.pm
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${P5SITE}/Bio/Matrix/PSM/Psm.pm
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${P5SITE}/Bio/Matrix/PSM/SiteMatrixI.pm
${P5SITE}/Bio/Matrix/PhylipDist.pm
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${P5SITE}/Bio/MolEvol/
${P5SITE}/Bio/MolEvol/CodonModel.pm
${P5SITE}/Bio/Nexml/
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${P5SITE}/Bio/NexmlIO.pm
${P5SITE}/Bio/Ontology/
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${P5SITE}/Bio/Ontology/GOterm.pm
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${P5SITE}/Bio/Ontology/SimpleGOEngine/
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@man man/man1/bp_aacomp.pl.1
@man man/man1/bp_biofetch_genbank_proxy.pl.1
@man man/man1/bp_bioflat_index.pl.1
@man man/man1/bp_biogetseq.pl.1
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@man man/man1/bp_composite_LD.pl.1
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@man man/man1/bp_download_query_genbank.pl.1
@man man/man1/bp_extract_feature_seq.pl.1
@man man/man1/bp_fast_load_gff.pl.1
@man man/man1/bp_fastam9_to_table.pl.1
@man man/man1/bp_fetch.pl.1
@man man/man1/bp_filter_search.pl.1
@man man/man1/bp_flanks.pl.1
@man man/man1/bp_gccalc.pl.1
@man man/man1/bp_genbank2gff.pl.1
@man man/man1/bp_genbank2gff3.pl.1
@man man/man1/bp_generate_histogram.pl.1
@man man/man1/bp_heterogeneity_test.pl.1
@man man/man1/bp_hivq.pl.1
@man man/man1/bp_hmmer_to_table.pl.1
@man man/man1/bp_index.pl.1
@man man/man1/bp_load_gff.pl.1
@man man/man1/bp_local_taxonomydb_query.pl.1
@man man/man1/bp_make_mrna_protein.pl.1
@man man/man1/bp_mask_by_search.pl.1
@man man/man1/bp_meta_gff.pl.1
@man man/man1/bp_mrtrans.pl.1
@man man/man1/bp_mutate.pl.1
@man man/man1/bp_netinstall.pl.1
@man man/man1/bp_nexus2nh.pl.1
@man man/man1/bp_nrdb.pl.1
@man man/man1/bp_oligo_count.pl.1
@man man/man1/bp_pairwise_kaks.pl.1
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@man man/man1/bp_remote_blast.pl.1
@man man/man1/bp_revtrans-motif.pl.1
@man man/man1/bp_search2BSML.pl.1
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@man man/man1/bp_search2tribe.pl.1
@man man/man1/bp_seq_length.pl.1
@man man/man1/bp_seqconvert.pl.1
@man man/man1/bp_seqcut.pl.1
@man man/man1/bp_seqfeature_load.pl.1
@man man/man1/bp_seqpart.pl.1
@man man/man1/bp_seqret.pl.1
@man man/man1/bp_seqretsplit.pl.1
@man man/man1/bp_split_seq.pl.1
@man man/man1/bp_sreformat.pl.1
@man man/man1/bp_taxid4species.pl.1
@man man/man1/bp_taxonomy2tree.pl.1
@man man/man1/bp_translate_seq.pl.1
@man man/man1/bp_tree2pag.pl.1
@man man/man1/bp_unflatten_seq.pl.1
@man man/man3p/Bio::Align::AlignI.3p
@man man/man3p/Bio::Align::DNAStatistics.3p
@man man/man3p/Bio::Align::Graphics.3p
@man man/man3p/Bio::Align::PairwiseStatistics.3p
@man man/man3p/Bio::Align::ProteinStatistics.3p
@man man/man3p/Bio::Align::StatisticsI.3p
@man man/man3p/Bio::Align::Utilities.3p
@man man/man3p/Bio::AlignIO.3p
@man man/man3p/Bio::AlignIO::Handler::GenericAlignHandler.3p
@man man/man3p/Bio::AlignIO::arp.3p
@man man/man3p/Bio::AlignIO::bl2seq.3p
@man man/man3p/Bio::AlignIO::clustalw.3p
@man man/man3p/Bio::AlignIO::emboss.3p
@man man/man3p/Bio::AlignIO::fasta.3p
@man man/man3p/Bio::AlignIO::largemultifasta.3p
@man man/man3p/Bio::AlignIO::maf.3p
@man man/man3p/Bio::AlignIO::mase.3p
@man man/man3p/Bio::AlignIO::mega.3p
@man man/man3p/Bio::AlignIO::meme.3p
@man man/man3p/Bio::AlignIO::metafasta.3p
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@man man/man3p/Bio::AlignIO::nexml.3p
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@man man/man3p/Bio::AlignIO::po.3p
@man man/man3p/Bio::AlignIO::proda.3p
@man man/man3p/Bio::AlignIO::prodom.3p
@man man/man3p/Bio::AlignIO::psi.3p
@man man/man3p/Bio::AlignIO::selex.3p
@man man/man3p/Bio::AlignIO::stockholm.3p
@man man/man3p/Bio::AlignIO::xmfa.3p
@man man/man3p/Bio::AnalysisI.3p
@man man/man3p/Bio::AnalysisParserI.3p
@man man/man3p/Bio::AnalysisResultI.3p
@man man/man3p/Bio::AnnotatableI.3p
@man man/man3p/Bio::Annotation::AnnotationFactory.3p
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@man man/man3p/Bio::Annotation::DBLink.3p
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@man man/man3p/Bio::Annotation::SimpleValue.3p
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@man man/man3p/Bio::Annotation::TagTree.3p
@man man/man3p/Bio::Annotation::Target.3p
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@man man/man3p/Bio::AnnotationCollectionI.3p
@man man/man3p/Bio::AnnotationI.3p
@man man/man3p/Bio::Assembly::Contig.3p
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@man man/man3p/Bio::Assembly::IO.3p
@man man/man3p/Bio::Assembly::IO::ace.3p
@man man/man3p/Bio::Assembly::IO::bowtie.3p
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@man man/man3p/Bio::Assembly::IO::phrap.3p
@man man/man3p/Bio::Assembly::IO::sam.3p
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@man man/man3p/Bio::Assembly::Scaffold.3p
@man man/man3p/Bio::Assembly::ScaffoldI.3p
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@man man/man3p/Bio::Cluster::SequenceFamily.3p
@man man/man3p/Bio::Cluster::UniGene.3p
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@man man/man3p/Bio::ClusterI.3p
@man man/man3p/Bio::ClusterIO.3p
@man man/man3p/Bio::ClusterIO::dbsnp.3p
@man man/man3p/Bio::ClusterIO::unigene.3p
@man man/man3p/Bio::CodonUsage::IO.3p
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@man man/man3p/Bio::Coordinate::Chain.3p
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@man man/man3p/Bio::Coordinate::Result::Gap.3p
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@man man/man3p/Bio::DB::Ace.3p
@man man/man3p/Bio::DB::BioFetch.3p
@man man/man3p/Bio::DB::CUTG.3p
@man man/man3p/Bio::DB::DBFetch.3p
@man man/man3p/Bio::DB::EMBL.3p
@man man/man3p/Bio::DB::EntrezGene.3p
@man man/man3p/Bio::DB::Expression.3p
@man man/man3p/Bio::DB::Expression::geo.3p
@man man/man3p/Bio::DB::Failover.3p
@man man/man3p/Bio::DB::Fasta.3p
@man man/man3p/Bio::DB::FileCache.3p
@man man/man3p/Bio::DB::Flat.3p
@man man/man3p/Bio::DB::Flat::BDB.3p
@man man/man3p/Bio::DB::Flat::BDB::embl.3p
@man man/man3p/Bio::DB::Flat::BDB::fasta.3p
@man man/man3p/Bio::DB::Flat::BDB::genbank.3p
@man man/man3p/Bio::DB::Flat::BDB::swiss.3p
@man man/man3p/Bio::DB::Flat::BinarySearch.3p
@man man/man3p/Bio::DB::GFF.3p
@man man/man3p/Bio::DB::GFF::Adaptor::ace.3p
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@man man/man3p/Bio::DB::GFF::Adaptor::biofetch_oracle.3p
@man man/man3p/Bio::DB::GFF::Adaptor::dbi.3p
@man man/man3p/Bio::DB::GFF::Adaptor::dbi::caching_handle.3p
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@man man/man3p/Bio::DB::GFF::Adaptor::dbi::mysql.3p
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@man man/man3p/Bio::DB::GFF::Adaptor::dbi::mysqlcmap.3p
@man man/man3p/Bio::DB::GFF::Adaptor::dbi::mysqlopt.3p
@man man/man3p/Bio::DB::GFF::Adaptor::dbi::oracle.3p
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@man man/man3p/Bio::DB::GFF::Adaptor::dbi::pg.3p
@man man/man3p/Bio::DB::GFF::Adaptor::dbi::pg_fts.3p
@man man/man3p/Bio::DB::GFF::Adaptor::memory.3p
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@man man/man3p/Bio::DB::GFF::Aggregator.3p
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@man man/man3p/Bio::DB::GFF::Aggregator::coding.3p
@man man/man3p/Bio::DB::GFF::Aggregator::gene.3p
@man man/man3p/Bio::DB::GFF::Aggregator::match.3p
@man man/man3p/Bio::DB::GFF::Aggregator::none.3p
@man man/man3p/Bio::DB::GFF::Aggregator::orf.3p
@man man/man3p/Bio::DB::GFF::Aggregator::processed_transcript.3p
@man man/man3p/Bio::DB::GFF::Aggregator::so_transcript.3p
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@man man/man3p/Bio::DB::GFF::Aggregator::ucsc_acembly.3p
@man man/man3p/Bio::DB::GFF::Aggregator::ucsc_ensgene.3p
@man man/man3p/Bio::DB::GFF::Aggregator::ucsc_genscan.3p
@man man/man3p/Bio::DB::GFF::Aggregator::ucsc_refgene.3p
@man man/man3p/Bio::DB::GFF::Aggregator::ucsc_sanger22.3p
@man man/man3p/Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo.3p
@man man/man3p/Bio::DB::GFF::Aggregator::ucsc_softberry.3p
@man man/man3p/Bio::DB::GFF::Aggregator::ucsc_twinscan.3p
@man man/man3p/Bio::DB::GFF::Aggregator::ucsc_unigene.3p
@man man/man3p/Bio::DB::GFF::Featname.3p
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@man man/man3p/Bio::DB::GFF::Homol.3p
@man man/man3p/Bio::DB::GFF::RelSegment.3p
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@man man/man3p/Bio::DB::HIV.3p
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@man man/man3p/Bio::Map::CytoMarker.3p
@man man/man3p/Bio::Map::CytoPosition.3p
@man man/man3p/Bio::Map::EntityI.3p
@man man/man3p/Bio::Map::FPCMarker.3p
@man man/man3p/Bio::Map::Gene.3p
@man man/man3p/Bio::Map::GeneMap.3p
@man man/man3p/Bio::Map::GenePosition.3p
@man man/man3p/Bio::Map::GeneRelative.3p
@man man/man3p/Bio::Map::LinkageMap.3p
@man man/man3p/Bio::Map::LinkagePosition.3p
@man man/man3p/Bio::Map::MapI.3p
@man man/man3p/Bio::Map::Mappable.3p
@man man/man3p/Bio::Map::MappableI.3p
@man man/man3p/Bio::Map::Marker.3p
@man man/man3p/Bio::Map::MarkerI.3p
@man man/man3p/Bio::Map::Microsatellite.3p
@man man/man3p/Bio::Map::OrderedPosition.3p
@man man/man3p/Bio::Map::OrderedPositionWithDistance.3p
@man man/man3p/Bio::Map::Physical.3p
@man man/man3p/Bio::Map::Position.3p
@man man/man3p/Bio::Map::PositionHandler.3p
@man man/man3p/Bio::Map::PositionHandlerI.3p
@man man/man3p/Bio::Map::PositionI.3p
@man man/man3p/Bio::Map::PositionWithSequence.3p
@man man/man3p/Bio::Map::Prediction.3p
@man man/man3p/Bio::Map::Relative.3p
@man man/man3p/Bio::Map::RelativeI.3p
@man man/man3p/Bio::Map::SimpleMap.3p
@man man/man3p/Bio::Map::TranscriptionFactor.3p
@man man/man3p/Bio::MapIO.3p
@man man/man3p/Bio::MapIO::fpc.3p
@man man/man3p/Bio::MapIO::mapmaker.3p
@man man/man3p/Bio::Matrix::Generic.3p
@man man/man3p/Bio::Matrix::IO.3p
@man man/man3p/Bio::Matrix::IO::mlagan.3p
@man man/man3p/Bio::Matrix::IO::phylip.3p
@man man/man3p/Bio::Matrix::IO::scoring.3p
@man man/man3p/Bio::Matrix::MatrixI.3p
@man man/man3p/Bio::Matrix::Mlagan.3p
@man man/man3p/Bio::Matrix::PSM::IO.3p
@man man/man3p/Bio::Matrix::PSM::IO::mast.3p
@man man/man3p/Bio::Matrix::PSM::IO::masta.3p
@man man/man3p/Bio::Matrix::PSM::IO::meme.3p
@man man/man3p/Bio::Matrix::PSM::IO::psiblast.3p
@man man/man3p/Bio::Matrix::PSM::IO::transfac.3p
@man man/man3p/Bio::Matrix::PSM::InstanceSite.3p
@man man/man3p/Bio::Matrix::PSM::InstanceSiteI.3p
@man man/man3p/Bio::Matrix::PSM::ProtMatrix.3p
@man man/man3p/Bio::Matrix::PSM::ProtPsm.3p
@man man/man3p/Bio::Matrix::PSM::Psm.3p
@man man/man3p/Bio::Matrix::PSM::PsmHeader.3p
@man man/man3p/Bio::Matrix::PSM::PsmHeaderI.3p
@man man/man3p/Bio::Matrix::PSM::PsmI.3p
@man man/man3p/Bio::Matrix::PSM::SiteMatrix.3p
@man man/man3p/Bio::Matrix::PSM::SiteMatrixI.3p
@man man/man3p/Bio::Matrix::PhylipDist.3p
@man man/man3p/Bio::Matrix::Scoring.3p
@man man/man3p/Bio::MolEvol::CodonModel.3p
@man man/man3p/Bio::Nexml::Factory.3p
@man man/man3p/Bio::NexmlIO.3p
@man man/man3p/Bio::Ontology::DocumentRegistry.3p
@man man/man3p/Bio::Ontology::GOterm.3p
@man man/man3p/Bio::Ontology::InterProTerm.3p
@man man/man3p/Bio::Ontology::OBOEngine.3p
@man man/man3p/Bio::Ontology::OBOterm.3p
@man man/man3p/Bio::Ontology::Ontology.3p
@man man/man3p/Bio::Ontology::OntologyEngineI.3p
@man man/man3p/Bio::Ontology::OntologyI.3p
@man man/man3p/Bio::Ontology::OntologyStore.3p
@man man/man3p/Bio::Ontology::Path.3p
@man man/man3p/Bio::Ontology::PathI.3p
@man man/man3p/Bio::Ontology::Relationship.3p
@man man/man3p/Bio::Ontology::RelationshipFactory.3p
@man man/man3p/Bio::Ontology::RelationshipI.3p
@man man/man3p/Bio::Ontology::RelationshipType.3p
@man man/man3p/Bio::Ontology::SimpleGOEngine::GraphAdaptor.3p
@man man/man3p/Bio::Ontology::SimpleOntologyEngine.3p
@man man/man3p/Bio::Ontology::Term.3p
@man man/man3p/Bio::Ontology::TermFactory.3p
@man man/man3p/Bio::Ontology::TermI.3p
@man man/man3p/Bio::OntologyIO.3p
@man man/man3p/Bio::OntologyIO::Handlers::BaseSAXHandler.3p
@man man/man3p/Bio::OntologyIO::Handlers::InterProHandler.3p
@man man/man3p/Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler.3p
@man man/man3p/Bio::OntologyIO::InterProParser.3p
@man man/man3p/Bio::OntologyIO::dagflat.3p
@man man/man3p/Bio::OntologyIO::goflat.3p
@man man/man3p/Bio::OntologyIO::obo.3p
@man man/man3p/Bio::OntologyIO::simplehierarchy.3p
@man man/man3p/Bio::OntologyIO::soflat.3p
@man man/man3p/Bio::ParameterBaseI.3p
@man man/man3p/Bio::Perl.3p
@man man/man3p/Bio::Phenotype::Correlate.3p
@man man/man3p/Bio::Phenotype::MeSH::Term.3p
@man man/man3p/Bio::Phenotype::MeSH::Twig.3p
@man man/man3p/Bio::Phenotype::Measure.3p
@man man/man3p/Bio::Phenotype::OMIM::MiniMIMentry.3p
@man man/man3p/Bio::Phenotype::OMIM::OMIMentry.3p
@man man/man3p/Bio::Phenotype::OMIM::OMIMentryAllelicVariant.3p
@man man/man3p/Bio::Phenotype::OMIM::OMIMparser.3p
@man man/man3p/Bio::Phenotype::Phenotype.3p
@man man/man3p/Bio::Phenotype::PhenotypeI.3p
@man man/man3p/Bio::PhyloNetwork.3p
@man man/man3p/Bio::PhyloNetwork::Factory.3p
@man man/man3p/Bio::PhyloNetwork::FactoryX.3p
@man man/man3p/Bio::PhyloNetwork::GraphViz.3p
@man man/man3p/Bio::PhyloNetwork::RandomFactory.3p
@man man/man3p/Bio::PhyloNetwork::TreeFactory.3p
@man man/man3p/Bio::PhyloNetwork::TreeFactoryMulti.3p
@man man/man3p/Bio::PhyloNetwork::TreeFactoryX.3p
@man man/man3p/Bio::PhyloNetwork::muVector.3p
@man man/man3p/Bio::PopGen::Genotype.3p
@man man/man3p/Bio::PopGen::GenotypeI.3p
@man man/man3p/Bio::PopGen::HtSNP.3p
@man man/man3p/Bio::PopGen::IO.3p
@man man/man3p/Bio::PopGen::IO::csv.3p
@man man/man3p/Bio::PopGen::IO::hapmap.3p
@man man/man3p/Bio::PopGen::IO::phase.3p
@man man/man3p/Bio::PopGen::IO::prettybase.3p
@man man/man3p/Bio::PopGen::Individual.3p
@man man/man3p/Bio::PopGen::IndividualI.3p
@man man/man3p/Bio::PopGen::Marker.3p
@man man/man3p/Bio::PopGen::MarkerI.3p
@man man/man3p/Bio::PopGen::PopStats.3p
@man man/man3p/Bio::PopGen::Population.3p
@man man/man3p/Bio::PopGen::PopulationI.3p
@man man/man3p/Bio::PopGen::Simulation::Coalescent.3p
@man man/man3p/Bio::PopGen::Simulation::GeneticDrift.3p
@man man/man3p/Bio::PopGen::Statistics.3p
@man man/man3p/Bio::PopGen::TagHaplotype.3p
@man man/man3p/Bio::PopGen::Utilities.3p
@man man/man3p/Bio::PrimarySeq.3p
@man man/man3p/Bio::PrimarySeqI.3p
@man man/man3p/Bio::PullParserI.3p
@man man/man3p/Bio::Range.3p
@man man/man3p/Bio::RangeI.3p
@man man/man3p/Bio::Restriction::Analysis.3p
@man man/man3p/Bio::Restriction::Enzyme.3p
@man man/man3p/Bio::Restriction::Enzyme::MultiCut.3p
@man man/man3p/Bio::Restriction::Enzyme::MultiSite.3p
@man man/man3p/Bio::Restriction::EnzymeCollection.3p
@man man/man3p/Bio::Restriction::EnzymeI.3p
@man man/man3p/Bio::Restriction::IO.3p
@man man/man3p/Bio::Restriction::IO::bairoch.3p
@man man/man3p/Bio::Restriction::IO::base.3p
@man man/man3p/Bio::Restriction::IO::itype2.3p
@man man/man3p/Bio::Restriction::IO::prototype.3p
@man man/man3p/Bio::Restriction::IO::withrefm.3p
@man man/man3p/Bio::Root::Build.3p
@man man/man3p/Bio::Root::Exception.3p
@man man/man3p/Bio::Root::HTTPget.3p
@man man/man3p/Bio::Root::IO.3p
@man man/man3p/Bio::Root::Root.3p
@man man/man3p/Bio::Root::RootI.3p
@man man/man3p/Bio::Root::Storable.3p
@man man/man3p/Bio::Root::Test.3p
@man man/man3p/Bio::Root::Utilities.3p
@man man/man3p/Bio::Root::Version.3p
@man man/man3p/Bio::Search::BlastStatistics.3p
@man man/man3p/Bio::Search::BlastUtils.3p
@man man/man3p/Bio::Search::DatabaseI.3p
@man man/man3p/Bio::Search::GenericDatabase.3p
@man man/man3p/Bio::Search::GenericStatistics.3p
@man man/man3p/Bio::Search::HSP::BlastHSP.3p
@man man/man3p/Bio::Search::HSP::BlastPullHSP.3p
@man man/man3p/Bio::Search::HSP::FastaHSP.3p
@man man/man3p/Bio::Search::HSP::GenericHSP.3p
@man man/man3p/Bio::Search::HSP::HMMERHSP.3p
@man man/man3p/Bio::Search::HSP::HSPFactory.3p
@man man/man3p/Bio::Search::HSP::HSPI.3p
@man man/man3p/Bio::Search::HSP::HmmpfamHSP.3p
@man man/man3p/Bio::Search::HSP::ModelHSP.3p
@man man/man3p/Bio::Search::HSP::PSLHSP.3p
@man man/man3p/Bio::Search::HSP::PsiBlastHSP.3p
@man man/man3p/Bio::Search::HSP::PullHSPI.3p
@man man/man3p/Bio::Search::HSP::WABAHSP.3p
@man man/man3p/Bio::Search::Hit::BlastHit.3p
@man man/man3p/Bio::Search::Hit::BlastPullHit.3p
@man man/man3p/Bio::Search::Hit::Fasta.3p
@man man/man3p/Bio::Search::Hit::GenericHit.3p
@man man/man3p/Bio::Search::Hit::HMMERHit.3p
@man man/man3p/Bio::Search::Hit::HitFactory.3p
@man man/man3p/Bio::Search::Hit::HitI.3p
@man man/man3p/Bio::Search::Hit::HmmpfamHit.3p
@man man/man3p/Bio::Search::Hit::ModelHit.3p
@man man/man3p/Bio::Search::Hit::PsiBlastHit.3p
@man man/man3p/Bio::Search::Hit::PullHitI.3p
@man man/man3p/Bio::Search::Hit::hmmer3Hit.3p
@man man/man3p/Bio::Search::Iteration::GenericIteration.3p
@man man/man3p/Bio::Search::Iteration::IterationI.3p
@man man/man3p/Bio::Search::Processor.3p
@man man/man3p/Bio::Search::Result::BlastPullResult.3p
@man man/man3p/Bio::Search::Result::BlastResult.3p
@man man/man3p/Bio::Search::Result::CrossMatchResult.3p
@man man/man3p/Bio::Search::Result::GenericResult.3p
@man man/man3p/Bio::Search::Result::HMMERResult.3p
@man man/man3p/Bio::Search::Result::HmmpfamResult.3p
@man man/man3p/Bio::Search::Result::PullResultI.3p
@man man/man3p/Bio::Search::Result::ResultFactory.3p
@man man/man3p/Bio::Search::Result::ResultI.3p
@man man/man3p/Bio::Search::Result::WABAResult.3p
@man man/man3p/Bio::Search::Result::hmmer3Result.3p
@man man/man3p/Bio::Search::SearchUtils.3p
@man man/man3p/Bio::Search::StatisticsI.3p
@man man/man3p/Bio::Search::Tiling::MapTileUtils.3p
@man man/man3p/Bio::Search::Tiling::MapTiling.3p
@man man/man3p/Bio::Search::Tiling::TilingI.3p
@man man/man3p/Bio::SearchDist.3p
@man man/man3p/Bio::SearchIO.3p
@man man/man3p/Bio::SearchIO::EventHandlerI.3p
@man man/man3p/Bio::SearchIO::FastHitEventBuilder.3p
@man man/man3p/Bio::SearchIO::IteratedSearchResultEventBuilder.3p
@man man/man3p/Bio::SearchIO::SearchResultEventBuilder.3p
@man man/man3p/Bio::SearchIO::SearchWriterI.3p
@man man/man3p/Bio::SearchIO::Writer::BSMLResultWriter.3p
@man man/man3p/Bio::SearchIO::Writer::GbrowseGFF.3p
@man man/man3p/Bio::SearchIO::Writer::HSPTableWriter.3p
@man man/man3p/Bio::SearchIO::Writer::HTMLResultWriter.3p
@man man/man3p/Bio::SearchIO::Writer::HitTableWriter.3p
@man man/man3p/Bio::SearchIO::Writer::ResultTableWriter.3p
@man man/man3p/Bio::SearchIO::Writer::TextResultWriter.3p
@man man/man3p/Bio::SearchIO::XML::BlastHandler.3p
@man man/man3p/Bio::SearchIO::XML::PsiBlastHandler.3p
@man man/man3p/Bio::SearchIO::axt.3p
@man man/man3p/Bio::SearchIO::blast.3p
@man man/man3p/Bio::SearchIO::blast_pull.3p
@man man/man3p/Bio::SearchIO::blasttable.3p
@man man/man3p/Bio::SearchIO::blastxml.3p
@man man/man3p/Bio::SearchIO::cross_match.3p
@man man/man3p/Bio::SearchIO::erpin.3p
@man man/man3p/Bio::SearchIO::exonerate.3p
@man man/man3p/Bio::SearchIO::fasta.3p
@man man/man3p/Bio::SearchIO::gmap_f9.3p
@man man/man3p/Bio::SearchIO::hmmer.3p
@man man/man3p/Bio::SearchIO::hmmer2.3p
@man man/man3p/Bio::SearchIO::hmmer3.3p
@man man/man3p/Bio::SearchIO::hmmer_pull.3p
@man man/man3p/Bio::SearchIO::infernal.3p
@man man/man3p/Bio::SearchIO::megablast.3p
@man man/man3p/Bio::SearchIO::psl.3p
@man man/man3p/Bio::SearchIO::rnamotif.3p
@man man/man3p/Bio::SearchIO::sim4.3p
@man man/man3p/Bio::SearchIO::waba.3p
@man man/man3p/Bio::SearchIO::wise.3p
@man man/man3p/Bio::Seq.3p
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@man man/man3p/Bio::Seq::EncodedSeq.3p
@man man/man3p/Bio::Seq::LargeLocatableSeq.3p
@man man/man3p/Bio::Seq::LargePrimarySeq.3p
@man man/man3p/Bio::Seq::LargeSeq.3p
@man man/man3p/Bio::Seq::LargeSeqI.3p
@man man/man3p/Bio::Seq::Meta.3p
@man man/man3p/Bio::Seq::Meta::Array.3p
@man man/man3p/Bio::Seq::MetaI.3p
@man man/man3p/Bio::Seq::PrimaryQual.3p
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@man man/man3p/Bio::Seq::QualI.3p
@man man/man3p/Bio::Seq::Quality.3p
@man man/man3p/Bio::Seq::RichSeq.3p
@man man/man3p/Bio::Seq::RichSeqI.3p
@man man/man3p/Bio::Seq::SeqBuilder.3p
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@man man/man3p/Bio::Seq::SeqFastaSpeedFactory.3p
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@man man/man3p/Bio::Seq::SequenceTrace.3p
@man man/man3p/Bio::Seq::SimulatedRead.3p
@man man/man3p/Bio::Seq::TraceI.3p
@man man/man3p/Bio::SeqAnalysisParserI.3p
@man man/man3p/Bio::SeqEvolution::DNAPoint.3p
@man man/man3p/Bio::SeqEvolution::EvolutionI.3p
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@man man/man3p/Bio::SeqFeature::Amplicon.3p
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@man man/man3p/Bio::SeqFeature::CollectionI.3p
@man man/man3p/Bio::SeqFeature::Computation.3p
@man man/man3p/Bio::SeqFeature::FeaturePair.3p
@man man/man3p/Bio::SeqFeature::Gene::Exon.3p
@man man/man3p/Bio::SeqFeature::Gene::ExonI.3p
@man man/man3p/Bio::SeqFeature::Gene::GeneStructure.3p
@man man/man3p/Bio::SeqFeature::Gene::GeneStructureI.3p
@man man/man3p/Bio::SeqFeature::Gene::Intron.3p
@man man/man3p/Bio::SeqFeature::Gene::NC_Feature.3p
@man man/man3p/Bio::SeqFeature::Gene::Poly_A_site.3p
@man man/man3p/Bio::SeqFeature::Gene::Promoter.3p
@man man/man3p/Bio::SeqFeature::Gene::Transcript.3p
@man man/man3p/Bio::SeqFeature::Gene::TranscriptI.3p
@man man/man3p/Bio::SeqFeature::Gene::UTR.3p
@man man/man3p/Bio::SeqFeature::Generic.3p
@man man/man3p/Bio::SeqFeature::Lite.3p
@man man/man3p/Bio::SeqFeature::PositionProxy.3p
@man man/man3p/Bio::SeqFeature::Primer.3p
@man man/man3p/Bio::SeqFeature::SiRNA::Oligo.3p
@man man/man3p/Bio::SeqFeature::SiRNA::Pair.3p
@man man/man3p/Bio::SeqFeature::Similarity.3p
@man man/man3p/Bio::SeqFeature::SimilarityPair.3p
@man man/man3p/Bio::SeqFeature::SubSeq.3p
@man man/man3p/Bio::SeqFeature::Tools::FeatureNamer.3p
@man man/man3p/Bio::SeqFeature::Tools::IDHandler.3p
@man man/man3p/Bio::SeqFeature::Tools::TypeMapper.3p
@man man/man3p/Bio::SeqFeature::Tools::Unflattener.3p
@man man/man3p/Bio::SeqFeature::TypedSeqFeatureI.3p
@man man/man3p/Bio::SeqFeatureI.3p
@man man/man3p/Bio::SeqI.3p
@man man/man3p/Bio::SeqIO.3p
@man man/man3p/Bio::SeqIO::FTHelper.3p
@man man/man3p/Bio::SeqIO::Handler::GenericRichSeqHandler.3p
@man man/man3p/Bio::SeqIO::MultiFile.3p
@man man/man3p/Bio::SeqIO::abi.3p
@man man/man3p/Bio::SeqIO::ace.3p
@man man/man3p/Bio::SeqIO::agave.3p
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@man man/man3p/Bio::SeqIO::excel.3p
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@man man/man3p/Bio::SeqIO::fastq.3p
@man man/man3p/Bio::SeqIO::flybase_chadoxml.3p
@man man/man3p/Bio::SeqIO::game.3p
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@man man/man3p/Bio::SeqIO::tigr.3p
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@man man/man3p/Bio::SeqIO::tinyseq.3p
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@man man/man3p/Bio::SeqIO::ztr.3p
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@man man/man3p/Bio::Structure::Entry.3p
@man man/man3p/Bio::Structure::IO.3p
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@man man/man3p/Bio::Structure::Residue.3p
@man man/man3p/Bio::Structure::SecStr::DSSP::Res.3p
@man man/man3p/Bio::Structure::SecStr::STRIDE::Res.3p
@man man/man3p/Bio::Structure::StructureI.3p
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@man man/man3p/Bio::Symbol::Symbol.3p
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@man man/man3p/Bio::Taxon.3p
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@man man/man3p/Bio::Taxonomy::Node.3p
@man man/man3p/Bio::Taxonomy::Taxon.3p
@man man/man3p/Bio::Taxonomy::Tree.3p
@man man/man3p/Bio::Tools::AlignFactory.3p
@man man/man3p/Bio::Tools::Alignment::Consed.3p
@man man/man3p/Bio::Tools::Alignment::Trim.3p
@man man/man3p/Bio::Tools::AmpliconSearch.3p
@man man/man3p/Bio::Tools::Analysis::DNA::ESEfinder.3p
@man man/man3p/Bio::Tools::Analysis::Protein::Domcut.3p
@man man/man3p/Bio::Tools::Analysis::Protein::ELM.3p
@man man/man3p/Bio::Tools::Analysis::Protein::GOR4.3p
@man man/man3p/Bio::Tools::Analysis::Protein::HNN.3p
@man man/man3p/Bio::Tools::Analysis::Protein::Mitoprot.3p
@man man/man3p/Bio::Tools::Analysis::Protein::NetPhos.3p
@man man/man3p/Bio::Tools::Analysis::Protein::Scansite.3p
@man man/man3p/Bio::Tools::Analysis::Protein::Sopma.3p
@man man/man3p/Bio::Tools::Analysis::SimpleAnalysisBase.3p
@man man/man3p/Bio::Tools::AnalysisResult.3p
@man man/man3p/Bio::Tools::Blat.3p
@man man/man3p/Bio::Tools::CodonTable.3p
@man man/man3p/Bio::Tools::Coil.3p
@man man/man3p/Bio::Tools::ECnumber.3p
@man man/man3p/Bio::Tools::EMBOSS::Palindrome.3p
@man man/man3p/Bio::Tools::EPCR.3p
@man man/man3p/Bio::Tools::ERPIN.3p
@man man/man3p/Bio::Tools::ESTScan.3p
@man man/man3p/Bio::Tools::Eponine.3p
@man man/man3p/Bio::Tools::Est2Genome.3p
@man man/man3p/Bio::Tools::Fgenesh.3p
@man man/man3p/Bio::Tools::FootPrinter.3p
@man man/man3p/Bio::Tools::GFF.3p
@man man/man3p/Bio::Tools::Gel.3p
@man man/man3p/Bio::Tools::Geneid.3p
@man man/man3p/Bio::Tools::Genemark.3p
@man man/man3p/Bio::Tools::Genewise.3p
@man man/man3p/Bio::Tools::Genomewise.3p
@man man/man3p/Bio::Tools::Genscan.3p
@man man/man3p/Bio::Tools::Glimmer.3p
@man man/man3p/Bio::Tools::Grail.3p
@man man/man3p/Bio::Tools::GuessSeqFormat.3p
@man man/man3p/Bio::Tools::HMMER::Domain.3p
@man man/man3p/Bio::Tools::HMMER::Results.3p
@man man/man3p/Bio::Tools::HMMER::Set.3p
@man man/man3p/Bio::Tools::Hmmpfam.3p
@man man/man3p/Bio::Tools::IUPAC.3p
@man man/man3p/Bio::Tools::Infernal.3p
@man man/man3p/Bio::Tools::Lucy.3p
@man man/man3p/Bio::Tools::MZEF.3p
@man man/man3p/Bio::Tools::Match.3p
@man man/man3p/Bio::Tools::OddCodes.3p
@man man/man3p/Bio::Tools::Phylo::Gerp.3p
@man man/man3p/Bio::Tools::Phylo::Gumby.3p
@man man/man3p/Bio::Tools::Phylo::Molphy.3p
@man man/man3p/Bio::Tools::Phylo::Molphy::Result.3p
@man man/man3p/Bio::Tools::Phylo::PAML.3p
@man man/man3p/Bio::Tools::Phylo::PAML::Codeml.3p
@man man/man3p/Bio::Tools::Phylo::PAML::ModelResult.3p
@man man/man3p/Bio::Tools::Phylo::PAML::Result.3p
@man man/man3p/Bio::Tools::Phylo::Phylip::ProtDist.3p
@man man/man3p/Bio::Tools::Prediction::Exon.3p
@man man/man3p/Bio::Tools::Prediction::Gene.3p
@man man/man3p/Bio::Tools::Primer3.3p
@man man/man3p/Bio::Tools::Primer::Assessor::Base.3p
@man man/man3p/Bio::Tools::Primer::AssessorI.3p
@man man/man3p/Bio::Tools::Primer::Feature.3p
@man man/man3p/Bio::Tools::Primer::Pair.3p
@man man/man3p/Bio::Tools::Prints.3p
@man man/man3p/Bio::Tools::Profile.3p
@man man/man3p/Bio::Tools::Promoterwise.3p
@man man/man3p/Bio::Tools::PrositeScan.3p
@man man/man3p/Bio::Tools::Protparam.3p
@man man/man3p/Bio::Tools::Pseudowise.3p
@man man/man3p/Bio::Tools::QRNA.3p
@man man/man3p/Bio::Tools::RNAMotif.3p
@man man/man3p/Bio::Tools::RandomDistFunctions.3p
@man man/man3p/Bio::Tools::RepeatMasker.3p
@man man/man3p/Bio::Tools::Run::GenericParameters.3p
@man man/man3p/Bio::Tools::Run::ParametersI.3p
@man man/man3p/Bio::Tools::Run::RemoteBlast.3p
@man man/man3p/Bio::Tools::Run::StandAloneBlast.3p
@man man/man3p/Bio::Tools::Run::StandAloneNCBIBlast.3p
@man man/man3p/Bio::Tools::Run::StandAloneWUBlast.3p
@man man/man3p/Bio::Tools::Run::WrapperBase.3p
@man man/man3p/Bio::Tools::Run::WrapperBase::CommandExts.3p
@man man/man3p/Bio::Tools::Seg.3p
@man man/man3p/Bio::Tools::SeqPattern.3p
@man man/man3p/Bio::Tools::SeqPattern::Backtranslate.3p
@man man/man3p/Bio::Tools::SeqStats.3p
@man man/man3p/Bio::Tools::SeqWords.3p
@man man/man3p/Bio::Tools::SiRNA.3p
@man man/man3p/Bio::Tools::SiRNA::Ruleset::saigo.3p
@man man/man3p/Bio::Tools::SiRNA::Ruleset::tuschl.3p
@man man/man3p/Bio::Tools::Sigcleave.3p
@man man/man3p/Bio::Tools::Signalp.3p
@man man/man3p/Bio::Tools::Signalp::ExtendedSignalp.3p
@man man/man3p/Bio::Tools::Sim4::Exon.3p
@man man/man3p/Bio::Tools::Sim4::Results.3p
@man man/man3p/Bio::Tools::Spidey::Exon.3p
@man man/man3p/Bio::Tools::Spidey::Results.3p
@man man/man3p/Bio::Tools::TandemRepeatsFinder.3p
@man man/man3p/Bio::Tools::TargetP.3p
@man man/man3p/Bio::Tools::Tmhmm.3p
@man man/man3p/Bio::Tools::dpAlign.3p
@man man/man3p/Bio::Tools::ipcress.3p
@man man/man3p/Bio::Tools::isPcr.3p
@man man/man3p/Bio::Tools::pICalculator.3p
@man man/man3p/Bio::Tools::pSW.3p
@man man/man3p/Bio::Tools::tRNAscanSE.3p
@man man/man3p/Bio::Tree::AlleleNode.3p
@man man/man3p/Bio::Tree::AnnotatableNode.3p
@man man/man3p/Bio::Tree::Compatible.3p
@man man/man3p/Bio::Tree::DistanceFactory.3p
@man man/man3p/Bio::Tree::Draw::Cladogram.3p
@man man/man3p/Bio::Tree::Node.3p
@man man/man3p/Bio::Tree::NodeI.3p
@man man/man3p/Bio::Tree::NodeNHX.3p
@man man/man3p/Bio::Tree::RandomFactory.3p
@man man/man3p/Bio::Tree::Statistics.3p
@man man/man3p/Bio::Tree::Tree.3p
@man man/man3p/Bio::Tree::TreeFunctionsI.3p
@man man/man3p/Bio::Tree::TreeI.3p
@man man/man3p/Bio::TreeIO.3p
@man man/man3p/Bio::TreeIO::NewickParser.3p
@man man/man3p/Bio::TreeIO::TreeEventBuilder.3p
@man man/man3p/Bio::TreeIO::cluster.3p
@man man/man3p/Bio::TreeIO::lintree.3p
@man man/man3p/Bio::TreeIO::newick.3p
@man man/man3p/Bio::TreeIO::nexml.3p
@man man/man3p/Bio::TreeIO::nexus.3p
@man man/man3p/Bio::TreeIO::nhx.3p
@man man/man3p/Bio::TreeIO::pag.3p
@man man/man3p/Bio::TreeIO::phyloxml.3p
@man man/man3p/Bio::TreeIO::svggraph.3p
@man man/man3p/Bio::TreeIO::tabtree.3p
@man man/man3p/Bio::UpdateableSeqI.3p
@man man/man3p/Bio::Variation::AAChange.3p
@man man/man3p/Bio::Variation::AAReverseMutate.3p
@man man/man3p/Bio::Variation::Allele.3p
@man man/man3p/Bio::Variation::DNAMutation.3p
@man man/man3p/Bio::Variation::IO.3p
@man man/man3p/Bio::Variation::IO::flat.3p
@man man/man3p/Bio::Variation::IO::xml.3p
@man man/man3p/Bio::Variation::RNAChange.3p
@man man/man3p/Bio::Variation::SNP.3p
@man man/man3p/Bio::Variation::SeqDiff.3p
@man man/man3p/Bio::Variation::VariantI.3p
@man man/man3p/Bio::WebAgent.3p
share/examples/bioperl/
share/examples/bioperl/Bio-DB-GFF/
share/examples/bioperl/Bio-DB-GFF/load_ucsc.pl
share/examples/bioperl/align/
share/examples/bioperl/align/FastAlign.pl
share/examples/bioperl/align/align_on_codons.pl
share/examples/bioperl/align/aligntutorial.pl
share/examples/bioperl/align/clustalw.pl
share/examples/bioperl/align/simplealign.pl
share/examples/bioperl/bioperl.pl
share/examples/bioperl/cluster/
share/examples/bioperl/cluster/dbsnp.pl
share/examples/bioperl/contributed/
share/examples/bioperl/contributed/nmrpdb_parse.pl
share/examples/bioperl/contributed/prosite2perl.pl
share/examples/bioperl/contributed/rebase2list.pl
share/examples/bioperl/db/
share/examples/bioperl/db/dbfetch
share/examples/bioperl/db/est_tissue_query.pl
share/examples/bioperl/db/gb2features.pl
share/examples/bioperl/db/getGenBank.pl
share/examples/bioperl/db/get_seqs.pl
share/examples/bioperl/db/rfetch.pl
share/examples/bioperl/db/use_registry.pl
share/examples/bioperl/generate_random_seq.pl
share/examples/bioperl/liveseq/
share/examples/bioperl/liveseq/change_gene.pl
share/examples/bioperl/longorf.pl
share/examples/bioperl/make_primers.pl
share/examples/bioperl/popgen/
share/examples/bioperl/popgen/parse_calc_stats.pl
share/examples/bioperl/quality/
share/examples/bioperl/quality/svgtrace.pl
share/examples/bioperl/rev_and_trans.pl
share/examples/bioperl/revcom_dir.pl
share/examples/bioperl/root/
share/examples/bioperl/root/README
share/examples/bioperl/root/exceptions1.pl
share/examples/bioperl/root/exceptions2.pl
share/examples/bioperl/root/exceptions3.pl
share/examples/bioperl/root/exceptions4.pl
share/examples/bioperl/root/lib/
share/examples/bioperl/root/lib/TestInterface.pm
share/examples/bioperl/root/lib/TestObject.pm
share/examples/bioperl/searchio/
share/examples/bioperl/searchio/blast_example.pl
share/examples/bioperl/searchio/custom_writer.pl
share/examples/bioperl/searchio/hitwriter.pl
share/examples/bioperl/searchio/hspwriter.pl
share/examples/bioperl/searchio/htmlwriter.pl
share/examples/bioperl/searchio/psiblast_features.pl
share/examples/bioperl/searchio/psiblast_iterations.pl
share/examples/bioperl/searchio/rawwriter.pl
share/examples/bioperl/searchio/resultwriter.pl
share/examples/bioperl/searchio/waba2gff.pl
share/examples/bioperl/searchio/waba2gff3.pl
share/examples/bioperl/sirna/
share/examples/bioperl/sirna/TAG
share/examples/bioperl/sirna/rnai_finder.cgi
share/examples/bioperl/structure/
share/examples/bioperl/structure/structure-io.pl
share/examples/bioperl/subsequence.cgi
share/examples/bioperl/tk/
share/examples/bioperl/tk/gsequence.pl
share/examples/bioperl/tk/hitdisplay.pl
share/examples/bioperl/tools/
share/examples/bioperl/tools/extract_genes.pl
share/examples/bioperl/tools/gb_to_gff.pl
share/examples/bioperl/tools/gff2ps.pl
share/examples/bioperl/tools/parse_codeml.pl
share/examples/bioperl/tools/psw.pl
share/examples/bioperl/tools/reverse-translate.pl
share/examples/bioperl/tools/run_genscan.pl
share/examples/bioperl/tools/run_primer3.pl
share/examples/bioperl/tools/seq_pattern.pl
share/examples/bioperl/tools/standaloneblast.pl
share/examples/bioperl/tree/
share/examples/bioperl/tree/paup2phylip.pl