Branch:
wxWidgets-wip
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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Heinz Wiesinger
63daf9f79a
All: Support $PRINT_PACKAGE_NAME env var
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2 years ago | |
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| README | 2fbe379fea academic/seqkit: Added (toolkit for FASTA/Q file manipulation) | 4 years ago |
| seqkit.SlackBuild | 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var | 2 years ago |
| seqkit.info | 26e3987764 academic/seqkit: update for version 0.16.0 | 3 years ago |
| slack-desc | 2fbe379fea academic/seqkit: Added (toolkit for FASTA/Q file manipulation) | 4 years ago |
README
SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file
manipulation
FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide
and protein sequences. Common manipulations of FASTA/Q file include
converting, searching, filtering, deduplication, splitting, shuffling,
and sampling. Existing tools only implement some of these manipulations,
and not particularly efficiently, and some are only available for
certain operating systems. Furthermore, the complicated installation
process of required packages and running environments can render these
programs less user friendly.
This project describes a cross-platform ultrafast comprehensive toolkit
for FASTA/Q processing. SeqKit provides executable binary files for all
major operating systems, including Windows, Linux, and Mac OS X, and can
be directly used without any dependencies or pre-configurations. SeqKit
demonstrates competitive performance in execution time and memory usage
compared to similar tools. The efficiency and usability of SeqKit enable
researchers to rapidly accomplish common FASTA/Q file manipulations.
Note: This just repackages the binaries provided from upstream.
Please cite:
Wei Shen,Shuai Le,Yan Li ,Fuquan Hu. SeqKit: A Cross-Platform and
Ultrafast Toolkit for FASTA/Q File Manipulation. October 5, 2016
https://doi.org/10.1371/journal.pone.0163962
manipulation
FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide
and protein sequences. Common manipulations of FASTA/Q file include
converting, searching, filtering, deduplication, splitting, shuffling,
and sampling. Existing tools only implement some of these manipulations,
and not particularly efficiently, and some are only available for
certain operating systems. Furthermore, the complicated installation
process of required packages and running environments can render these
programs less user friendly.
This project describes a cross-platform ultrafast comprehensive toolkit
for FASTA/Q processing. SeqKit provides executable binary files for all
major operating systems, including Windows, Linux, and Mac OS X, and can
be directly used without any dependencies or pre-configurations. SeqKit
demonstrates competitive performance in execution time and memory usage
compared to similar tools. The efficiency and usability of SeqKit enable
researchers to rapidly accomplish common FASTA/Q file manipulations.
Note: This just repackages the binaries provided from upstream.
Please cite:
Wei Shen,Shuai Le,Yan Li ,Fuquan Hu. SeqKit: A Cross-Platform and
Ultrafast Toolkit for FASTA/Q File Manipulation. October 5, 2016
https://doi.org/10.1371/journal.pone.0163962