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11.0
12.0
12.1
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7521abef93
academic/pysam: Use internal htslib-1.14
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2 years ago | |
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| README | faca3e09ed academic/pysam: Updated for version 0.13.0. | 6 years ago |
| pysam.SlackBuild | 7521abef93 academic/pysam: Use internal htslib-1.14 | 2 years ago |
| pysam.info | 2d3c00e7cd academic/pysam: Updated to version 0.18.0 | 2 years ago |
| slack-desc | d89e34d443 academic/pysam: Updated for version 0.14.1. | 6 years ago |
README
Pysam is a python module for reading and manipulating files in the
SAM/BAM format. The SAM/BAM format is a way to store efficiently large
numbers of alignments (Li 2009), such as those routinely created by
next-generation sequencing methods.
Pysam is a lightweight wrapper of the samtools_ C-API. Pysam also
includes an interface for tabix.
Reference: Li et al. Bioinformatics. 2009 Aug 15;25(16):2078-9.
doi: 10.1093/bioinformatics/btp352.
The Sequence Alignment/Map format and SAMtools.
SAM/BAM format. The SAM/BAM format is a way to store efficiently large
numbers of alignments (Li 2009), such as those routinely created by
next-generation sequencing methods.
Pysam is a lightweight wrapper of the samtools_ C-API. Pysam also
includes an interface for tabix.
Reference: Li et al. Bioinformatics. 2009 Aug 15;25(16):2078-9.
doi: 10.1093/bioinformatics/btp352.
The Sequence Alignment/Map format and SAMtools.