Aftakking:
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Dave Woodfall
f67f30e039
academic/tophat: Use -std=c++14.
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2 jaren geleden | |
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| README | a2cdd781cc academic/tophat: Updated for version 2.0.13. | 9 jaren geleden |
| References | d9759a11f4 academic/tophat: Added (Splice junction mapper for RNA-Seq reads). | 11 jaren geleden |
| make_pair.patch | c920f65d43 academic/tophat: Patched for gcc >= 6.x. | 3 jaren geleden |
| slack-desc | 45e3e0299e academic/tophat: Updated for version 2.1.2. | 5 jaren geleden |
| tophat.SlackBuild | f67f30e039 academic/tophat: Use -std=c++14. | 2 jaren geleden |
| tophat.info | 45e3e0299e academic/tophat: Updated for version 2.1.2. | 5 jaren geleden |
README
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput
short read aligner Bowtie, and then analyzes the mapping results to
identify splice junctions between exons.
TopHat is a collaborative effort between the Institute of Genetic
Medicine at Johns Hopkins University, the Departments of Mathematics
and Molecular and Cell Biology at the University of California,
Berkeley and the Department of Stem Cell and Regenerative Biology at
Harvard University.
A recommended dependency is bowtie2.
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput
short read aligner Bowtie, and then analyzes the mapping results to
identify splice junctions between exons.
TopHat is a collaborative effort between the Institute of Genetic
Medicine at Johns Hopkins University, the Departments of Mathematics
and Molecular and Cell Biology at the University of California,
Berkeley and the Department of Stem Cell and Regenerative Biology at
Harvard University.
A recommended dependency is bowtie2.