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- PAML: Phylogenetic Analysis by Maximum Likelihood
- PAML is a package of programs for phylogenetic analyses of DNA or
- protein sequences using maximum likelihood. PAML is not good for tree
- making. It may be used to estimate parameters and test hypotheses to
- study the evolutionary process, when you have reconstructed trees
- using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.
- Notes about running of PAML programs and the package:
- - Example datasets are included in /usr/share/paml/examples
- - Control files for PAML programs are in /usr/share/paml
- - Additional executables are placed in /usr/libexec/paml
- Suggested citation:
- Yang, Z. 2007. PAML 4: a program package for phylogenetic analysis by
- maximum likelihood. Molecular Biology and Evolution 24: 1586-1591
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