cistrome-MACS.SlackBuild 3.4 KB

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  1. #!/bin/bash
  2. # Slackware build script for cistrome-MACS
  3. # Copyright 2013-2021 Petar Petrov slackalaxy@gmail.com
  4. # All rights reserved.
  5. #
  6. # Redistribution and use of this script, with or without modification, is
  7. # permitted provided that the following conditions are met:
  8. #
  9. # 1. Redistributions of this script must retain the above copyright
  10. # notice, this list of conditions and the following disclaimer.
  11. #
  12. # THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
  13. # WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
  14. # MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
  15. # EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
  16. # SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
  17. # PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
  18. # OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
  19. # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
  20. # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
  21. # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  22. cd $(dirname $0) ; CWD=$(pwd)
  23. PRGNAM=cistrome-MACS
  24. VERSION=${VERSION:-1.4.2}
  25. BUILD=${BUILD:-2}
  26. TAG=${TAG:-_SBo}
  27. PKGTYPE=${PKGTYPE:-tgz}
  28. SRCNAM=MACS
  29. SRCVER=1.4.2-1
  30. if [ -z "$ARCH" ]; then
  31. case "$( uname -m )" in
  32. i?86) ARCH=i586 ;;
  33. arm*) ARCH=arm ;;
  34. *) ARCH=$( uname -m ) ;;
  35. esac
  36. fi
  37. # If the variable PRINT_PACKAGE_NAME is set, then this script will report what
  38. # the name of the created package would be, and then exit. This information
  39. # could be useful to other scripts.
  40. if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
  41. echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
  42. exit 0
  43. fi
  44. TMP=${TMP:-/tmp/SBo}
  45. PKG=$TMP/package-$PRGNAM
  46. OUTPUT=${OUTPUT:-/tmp}
  47. if [ "$ARCH" = "i586" ]; then
  48. SLKCFLAGS="-O2 -march=i586 -mtune=i686"
  49. LIBDIRSUFFIX=""
  50. elif [ "$ARCH" = "i686" ]; then
  51. SLKCFLAGS="-O2 -march=i686 -mtune=i686"
  52. LIBDIRSUFFIX=""
  53. elif [ "$ARCH" = "x86_64" ]; then
  54. SLKCFLAGS="-O2 -fPIC"
  55. LIBDIRSUFFIX="64"
  56. else
  57. SLKCFLAGS="-O2"
  58. LIBDIRSUFFIX=""
  59. fi
  60. # 20220222 bkw: depending on what client was used to download the file,
  61. # it may have CGI parameters in the filename.
  62. TARBALL=$CWD/${SRCNAM}-$SRCVER.tar.gz
  63. if [ ! -e $TARBALL ]; then
  64. TARBALL="$( /bin/ls $TARBALL\?* | head -1 )"
  65. fi
  66. set -e
  67. rm -rf $PKG
  68. mkdir -p $TMP $PKG $OUTPUT
  69. cd $TMP
  70. rm -rf $SRCNAM-$VERSION
  71. tar xvf $TARBALL
  72. cd $SRCNAM-$VERSION
  73. chown -R root:root .
  74. find -L . \
  75. \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
  76. -o -perm 511 \) -exec chmod 755 {} \; -o \
  77. \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
  78. -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
  79. python setup.py install --root=$PKG
  80. find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
  81. | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
  82. mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
  83. cp -a \
  84. ChangeLog COPYING INSTALL NEW_IN_MACS14 README PKG-INFO\
  85. $PKG/usr/doc/$PRGNAM-$VERSION
  86. cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
  87. cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
  88. # Ugene expects this to have the py suffix
  89. cd $PKG/usr/bin
  90. ln -s macs14 macs14.py
  91. mkdir -p $PKG/install
  92. cat $CWD/slack-desc > $PKG/install/slack-desc
  93. cd $PKG
  94. /sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE