Heinz Wiesinger 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var %!s(int64=3) %!d(string=hai) anos
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desktop fe3095faf8 academic/staden: Several fixes/enhancements %!s(int64=12) %!d(string=hai) anos
README 9d8a8a88ef academic/staden: Updated for version 2.0.0b10. %!s(int64=10) %!d(string=hai) anos
References 7bf998ee43 academic/staden: Added (DNA sequence assembly, editing, and analysis tools) %!s(int64=12) %!d(string=hai) anos
doinst.sh 7bf998ee43 academic/staden: Added (DNA sequence assembly, editing, and analysis tools) %!s(int64=12) %!d(string=hai) anos
slack-desc 1f0c859cff academic/staden: Updated for version 2.0.0b11. %!s(int64=7) %!d(string=hai) anos
staden.SlackBuild 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var %!s(int64=3) %!d(string=hai) anos
staden.info 1f0c859cff academic/staden: Updated for version 2.0.0b11. %!s(int64=7) %!d(string=hai) anos

README

The programs part of the Staden package provide an excellent and fully
developed set of DNA sequence assembly, editing, analysis and more.

Some of its features include:
GAP4 - Performs assembly, contig joining, assembly checking, repeat
search, experiment suggestion, read pair analysis and contig
editing.
GAP5 - The new development version of Gap4, designed to work with the
large volumes of data attainable through the newer sequencing
technologies.
PREGAP4 - Provides a graphical user interface to set up the processing
required to prepare trace data for assembly or analysis.
SPIN - Compares pairs of sequences in many ways, often presenting its
results graphically and has a sliding sequence window linked to
the plots.
TREV - A rapid and flexible viewer and editor for ABI, ALF or SCF
trace files.

For more information and citing, visit Staden's web page and check the
"References" file in the documentation.