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f27ea5443b
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Heinz Wiesinger
63daf9f79a
All: Support $PRINT_PACKAGE_NAME env var
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3 년 전 | |
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| .. | ||
| README | 8d79c453ce academic/bwa: Updated for version 0.7.15. | 8 년 전 |
| References | ab46533b59 academic/bwa: Added (Burrows-Wheeler Aligner). | 12 년 전 |
| bwa.SlackBuild | 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var | 3 년 전 |
| bwa.info | 7abde72faf academic/bwa: Updated for version 0.7.17. | 6 년 전 |
| slack-desc | 7abde72faf academic/bwa: Updated for version 0.7.17. | 6 년 전 |
README
Burrows-Wheeler Aligner (BWA) is an efficient program that aligns
relatively short nucleotide sequences against a long reference sequence
such as the human genome. It implements two algorithms, bwa-short and
BWA-SW. The former works for query sequences shorter than 200bp and the
latter for longer sequences up to around 100kbp. Both algorithms do
gapped alignment. They are usually more accurate and faster on queries
with low error rates.
A configuration file ("_aptx_configuration_file") will be used if it is
in your $HOME. An example configuration file is available in
/usr/share/archeopteryx.
If you use BWA-SW, please cite:
Li H. and Durbin R. (2010) Fast and accurate long-read alignment with
Burrows-Wheeler Transform. Bioinformatics, Epub.
relatively short nucleotide sequences against a long reference sequence
such as the human genome. It implements two algorithms, bwa-short and
BWA-SW. The former works for query sequences shorter than 200bp and the
latter for longer sequences up to around 100kbp. Both algorithms do
gapped alignment. They are usually more accurate and faster on queries
with low error rates.
A configuration file ("_aptx_configuration_file") will be used if it is
in your $HOME. An example configuration file is available in
/usr/share/archeopteryx.
If you use BWA-SW, please cite:
Li H. and Durbin R. (2010) Fast and accurate long-read alignment with
Burrows-Wheeler Transform. Bioinformatics, Epub.