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Petar Petrov
32bfc419eb
academic/EMBOSS: Update binaries location.
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| EMBOSS.SlackBuild | 32bfc419eb academic/EMBOSS: Update binaries location. | 2 éve |
| EMBOSS.desktop | 1521887388 academic/EMBOSS: Make .desktop validate. | 7 éve |
| EMBOSS.info | 4d64a77588 academic/EMBOSS: Use zulu-openjdk11. | 2 éve |
| EMBOSS.png | 9855d21463 academic/EMBOSS: Updated for version 6.5.7. | 12 éve |
| README | 9855d21463 academic/EMBOSS: Updated for version 6.5.7. | 12 éve |
| References | 9855d21463 academic/EMBOSS: Updated for version 6.5.7. | 12 éve |
| doinst.sh | 4e126c8b57 academic/EMBOSS: Added (European Molecular Biology OSS) | 13 éve |
| slack-desc | ec514e32c4 Multiple: update email, year and slack-desc | 8 éve |
README
EMBOSS is "The European Molecular Biology Open Software Suite".
EMBOSS is a free Open Source software analysis package specially
developed for the needs of the molecular biology (e.g. EMBnet) user
community. The software automatically copes with data in a variety of
formats and even allows transparent retrieval of sequence data from
the web. Also, as extensive libraries are provided with the package,
it is a platform to allow other scientists to develop and release
software in true open source spirit. EMBOSS also integrates a range of
currently available packages and tools for sequence analysis into a
seamless whole. EMBOSS breaks the historical trend towards commercial
software packages.
Within EMBOSS you will find around hundreds of programs (applications)
covering areas such as:
- Sequence alignment
- Rapid database searching with sequence patterns
- Protein motif identification, including domain analysis
- Nucleotide sequence pattern analysis -- for example to identify CpG
islands or repeats
- Codon usage analysis for small genomes
- Rapid identification of sequence patterns in large scale sequence
sets
- Presentation tools for publication
Optional, run-time dependencies are clustalw and primer3 -- needed if
you want to use the wrappers emma and eprimer32.
For details and citation:
EMBOSS: The European Molecular Biology Open Software Suite (2000)
Rice,P. Longden,I. and Bleasby,A. Trends in Genetics 16, (6) pp276-277
EMBOSS is a free Open Source software analysis package specially
developed for the needs of the molecular biology (e.g. EMBnet) user
community. The software automatically copes with data in a variety of
formats and even allows transparent retrieval of sequence data from
the web. Also, as extensive libraries are provided with the package,
it is a platform to allow other scientists to develop and release
software in true open source spirit. EMBOSS also integrates a range of
currently available packages and tools for sequence analysis into a
seamless whole. EMBOSS breaks the historical trend towards commercial
software packages.
Within EMBOSS you will find around hundreds of programs (applications)
covering areas such as:
- Sequence alignment
- Rapid database searching with sequence patterns
- Protein motif identification, including domain analysis
- Nucleotide sequence pattern analysis -- for example to identify CpG
islands or repeats
- Codon usage analysis for small genomes
- Rapid identification of sequence patterns in large scale sequence
sets
- Presentation tools for publication
Optional, run-time dependencies are clustalw and primer3 -- needed if
you want to use the wrappers emma and eprimer32.
For details and citation:
EMBOSS: The European Molecular Biology Open Software Suite (2000)
Rice,P. Longden,I. and Bleasby,A. Trends in Genetics 16, (6) pp276-277