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lalnview
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README

README 806 B
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  1. LalnView is a graphical program for visualizing local alignments
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  2. between two sequences (protein or nucleic acids). Sequences are
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  3. represented by colored rectangles to give an overall picture of the
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  4. similarities between the two sequences. Blocks of similarity between
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  5. the two sequences are colored according to the degree of identity
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  6. between segments.
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  7. 

  8. A suitable alignment tool for protein sequences is SIM at ExPASy:
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  9. https://web.expasy.org/sim/
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  10. 

  11. SIM finds a user-defined number of best non-intersecting alignments
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  12. between two protein sequences or within a sequence. Once the alignment
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  13. is computed, you can view it using LalnView.
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  14. 

  15. For details and citation:
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  16. Duret, L., Gasteiger, E. and Perriere, G. (1996) LalnView: a
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  17. graphical viewer for pairwise sequence alignments. Comput. Applic.
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  18. Biosci., 12, 507-510
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  19.