درخت:
cc72a3d5d8
11.0
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bedlam
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dive
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Dave Woodfall
f67f30e039
academic/tophat: Use -std=c++14.
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2 سال پیش | |
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| README | a2cdd781cc academic/tophat: Updated for version 2.0.13. | 9 سال پیش |
| References | d9759a11f4 academic/tophat: Added (Splice junction mapper for RNA-Seq reads). | 11 سال پیش |
| make_pair.patch | c920f65d43 academic/tophat: Patched for gcc >= 6.x. | 3 سال پیش |
| slack-desc | 45e3e0299e academic/tophat: Updated for version 2.1.2. | 5 سال پیش |
| tophat.SlackBuild | f67f30e039 academic/tophat: Use -std=c++14. | 2 سال پیش |
| tophat.info | 45e3e0299e academic/tophat: Updated for version 2.1.2. | 5 سال پیش |
README
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput
short read aligner Bowtie, and then analyzes the mapping results to
identify splice junctions between exons.
TopHat is a collaborative effort between the Institute of Genetic
Medicine at Johns Hopkins University, the Departments of Mathematics
and Molecular and Cell Biology at the University of California,
Berkeley and the Department of Stem Cell and Regenerative Biology at
Harvard University.
A recommended dependency is bowtie2.
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput
short read aligner Bowtie, and then analyzes the mapping results to
identify splice junctions between exons.
TopHat is a collaborative effort between the Institute of Genetic
Medicine at Johns Hopkins University, the Departments of Mathematics
and Molecular and Cell Biology at the University of California,
Berkeley and the Department of Stem Cell and Regenerative Biology at
Harvard University.
A recommended dependency is bowtie2.