Tree:
cc72a3d5d8
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
15.0-20230325.1
15.0-20230318.1
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15.0-20230107.1
15.0-20221231.1
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15.0-20221217.1
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14.2-20210417.1
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14.2-20200614.1
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14.2-20200424.1
14.2-20200419.1
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14.2-20200406.1
14.2-20200404.1
14.2-20200328.1
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14.2-20200112.1
14.2-20200103.1
14.2-20191231.1
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14.2-20190504.1
14.2-20190427.1
14.2-20190420.1
14.2-20190413.1
14.2-20190406.1
14.2-20190330.1
14.2-20190323.1
14.2-20190316.1
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14.2-20190202.1
14.2-20190126.1
14.2-20190119.1
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14.2-20190105.1
14.2-20181229.1
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14.2-20181222.1
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14.2-20181020.1
14.2-20181013.1
14.2-20181006.1
14.2-20180929.1
14.2-20180923.1
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14.2-20180908.1
14.2-20180901.1
14.2-20180825.1
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14.2-20180804.1
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14.2-20180714.1
14.2-20180707.1
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14.2-20180609.1
14.2-20180602.1
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Heinz Wiesinger
63daf9f79a
All: Support $PRINT_PACKAGE_NAME env var
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3 years ago | |
|---|---|---|
| .. | ||
| README | 201f403821 academic/tabix-legacy: Added (Generic indexer). | 5 years ago |
| slack-desc | 201f403821 academic/tabix-legacy: Added (Generic indexer). | 5 years ago |
| tabix-legacy.SlackBuild | 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var | 3 years ago |
| tabix-legacy.info | 201f403821 academic/tabix-legacy: Added (Generic indexer). | 5 years ago |
README
Tabix indexes a TAB-delimited genome position file in.tab.bgz and
creates an index file in.tab.bgz.tbi when region is absent from the
command-line. The input data file must be position sorted and
compressed by bgzip which has a gzip like interface. After indexing,
tabix is able to quickly retrieve data lines overlapping regions
specified in the format "chr:beginPos-endPos". Fast data retrieval
also works over network if URI is given as a file name and in this
case the index file will be downloaded if it is not present locally.
NOTE!
Tabix is now included in htslib. This is an older version of the
program, kept here for compatibility with Ugene. You can safely install
it along htslib. When you start Ugene, go to Settings > Preferences >
External Tools and manually select the legacy binary in /usr/bin/
creates an index file in.tab.bgz.tbi when region is absent from the
command-line. The input data file must be position sorted and
compressed by bgzip which has a gzip like interface. After indexing,
tabix is able to quickly retrieve data lines overlapping regions
specified in the format "chr:beginPos-endPos". Fast data retrieval
also works over network if URI is given as a file name and in this
case the index file will be downloaded if it is not present locally.
NOTE!
Tabix is now included in htslib. This is an older version of the
program, kept here for compatibility with Ugene. You can safely install
it along htslib. When you start Ugene, go to Settings > Preferences >
External Tools and manually select the legacy binary in /usr/bin/