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12.0
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user/anddt/system/postgresql
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B. Watson
de0652471d
academic/ncbi-rmblastn: Allow ARCH=i586 in environment.
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| README | 3f6353744d academic/ncbi-rmblastn: Added (NCBI RMBlast). | 6 gadi atpakaļ |
| ncbi-rmblastn.SlackBuild | de0652471d academic/ncbi-rmblastn: Allow ARCH=i586 in environment. | 2 gadi atpakaļ |
| ncbi-rmblastn.info | a986484738 academic/ncbi-rmblastn: Update DEP. | 5 gadi atpakaļ |
| slack-desc | 3f6353744d academic/ncbi-rmblastn: Added (NCBI RMBlast). | 6 gadi atpakaļ |
README
RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST
suite. The primary difference between this distribution and the NCBI
distribution is the addition of a new program "rmblastn" for use with
RepeatMasker and RepeatModeler.
RMBlast supports RepeatMasker searches by adding a few necessary
features to the stock NCBI blastn program. These include:
- Support for custom matrices ( without KA-Statistics )
- Support for cross_match-like complexity adjusted scoring
(Cross_match is Phil Green's seeded smith-waterman search algorithm:
www.phrap.org )
- Support for cross_match-like masklevel filtering.
suite. The primary difference between this distribution and the NCBI
distribution is the addition of a new program "rmblastn" for use with
RepeatMasker and RepeatModeler.
RMBlast supports RepeatMasker searches by adding a few necessary
features to the stock NCBI blastn program. These include:
- Support for custom matrices ( without KA-Statistics )
- Support for cross_match-like complexity adjusted scoring
(Cross_match is Phil Green's seeded smith-waterman search algorithm:
www.phrap.org )
- Support for cross_match-like masklevel filtering.