Albero (Tree):
cc72a3d5d8
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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brobr
86f0c20fe7
academic/flexbar: Update copyright year.
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3 anni fa | |
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| .. | ||
| README | 87f60da8de academic/flexbar: Added (barcode and adapter removal). | 7 anni fa |
| flexbar.SlackBuild | 86f0c20fe7 academic/flexbar: Update copyright year. | 3 anni fa |
| flexbar.info | b72f6369cc academic/flexbar: Updated for version 3.5.0. | 5 anni fa |
| slack-desc | 87f60da8de academic/flexbar: Added (barcode and adapter removal). | 7 anni fa |
README
The program Flexbar preprocesses high-throughput sequencing data
efficiently. It demultiplexes barcoded runs and removes adapter
sequences. Moreover, trimming and filtering features are provided.
Flexbar increases read mapping rates and improves genome as well as
transcriptome assemblies. It supports next-generation sequencing data
in fasta and fastq format, e.g. from Roche 454 and the Illumina
platform.
The script downloads the segan-library needed for compilation.
References
Johannes T. Roehr, Christoph Dieterich, Knut Reinert:
Flexbar 3.0 - SIMD and multicore parallelization. Bioinformatics 2017.
Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich:
Flexbar - flexible barcode and adapter processing for next-generation
sequencing platforms. Biology 2012.
efficiently. It demultiplexes barcoded runs and removes adapter
sequences. Moreover, trimming and filtering features are provided.
Flexbar increases read mapping rates and improves genome as well as
transcriptome assemblies. It supports next-generation sequencing data
in fasta and fastq format, e.g. from Roche 454 and the Illumina
platform.
The script downloads the segan-library needed for compilation.
References
Johannes T. Roehr, Christoph Dieterich, Knut Reinert:
Flexbar 3.0 - SIMD and multicore parallelization. Bioinformatics 2017.
Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich:
Flexbar - flexible barcode and adapter processing for next-generation
sequencing platforms. Biology 2012.