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12.0
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Andrew Clemons
54e0055408
academic/bowtie2: Mark x86 as unsupported.
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| README | ad31a4947a academic/bowtie2: Added (A tool for aligning sequencing reads). | 11 jaren geleden |
| bowtie2.SlackBuild | 54e0055408 academic/bowtie2: Mark x86 as unsupported. | 2 jaren geleden |
| bowtie2.info | 54e0055408 academic/bowtie2: Mark x86 as unsupported. | 2 jaren geleden |
| slack-desc | 5a353968a9 academic/bowtie2: Updated for version 2.3.4.3 + new maintainer. | 5 jaren geleden |
README
Bowtie 2 is an ultrafast and memory-efficient tool for aligning
sequencing reads to long reference sequences. It is particularly good
at aligning reads of about 50 up to 100s or 1,000s of characters, and
particularly good at aligning to relatively long (e.g. mammalian)
genomes. Bowtie 2 indexes the genome with an FM Index to keep its
memory footprint small: for the human genome, its memory footprint is
typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-
end alignment modes.
Please cite:
Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2.
Nature Methods. 2012, 9:357-359.
sequencing reads to long reference sequences. It is particularly good
at aligning reads of about 50 up to 100s or 1,000s of characters, and
particularly good at aligning to relatively long (e.g. mammalian)
genomes. Bowtie 2 indexes the genome with an FM Index to keep its
memory footprint small: for the human genome, its memory footprint is
typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-
end alignment modes.
Please cite:
Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2.
Nature Methods. 2012, 9:357-359.