Branch:
bedlam-name-fixes
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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Heinz Wiesinger
63daf9f79a
All: Support $PRINT_PACKAGE_NAME env var
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| README | bccf1f3d88 academic/cutadapt: Fix README. | 7 years ago |
| cutadapt.SlackBuild | 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var | 2 years ago |
| cutadapt.info | 150b26a1a5 academic/cutadapt: Updated for version 1.14. | 6 years ago |
| slack-desc | a7c538bac2 academic/cutadapt: Updated for version 1.13. | 7 years ago |
README
Cutadapt: trim adapters from high-throughput sequencing reads
Cutadapt finds and removes adapter sequences, primers, poly-A tails
and other types of unwanted sequence from your high-throughput
sequencing reads.
Cleaning your data in this way is often required: Reads from small-RNA
sequencing contain the 3' sequencing adapter because the read is
longer than the molecule that is sequenced. Amplicon reads start with
a primer sequence. Poly-A tails are useful for pulling out RNA from
your sample, but often you don't want them to be in your reads.
Cutadapt helps with these trimming tasks by finding the adapter or
primer sequences in an error-tolerant way. It can also modify and
filter reads in various ways. Adapter sequences can contain IUPAC
wildcard characters. Also, paired-end reads and even colorspace data
is supported. If you want, you can also just demultiplex your input
data, without removing adapter sequences at all.
Cutadapt comes with an extensive suite of automated tests and is
available under the terms of the MIT license.
If you use cutadapt, please cite:
Marcel Martin. Cutadapt removes adapter sequences from high-throughput
sequencing reads. EMBnet.journal, 17(1):10-12, May 2011. DOI:
http://dx.doi.org/10.14806/ej.17.1.200
Cutadapt finds and removes adapter sequences, primers, poly-A tails
and other types of unwanted sequence from your high-throughput
sequencing reads.
Cleaning your data in this way is often required: Reads from small-RNA
sequencing contain the 3' sequencing adapter because the read is
longer than the molecule that is sequenced. Amplicon reads start with
a primer sequence. Poly-A tails are useful for pulling out RNA from
your sample, but often you don't want them to be in your reads.
Cutadapt helps with these trimming tasks by finding the adapter or
primer sequences in an error-tolerant way. It can also modify and
filter reads in various ways. Adapter sequences can contain IUPAC
wildcard characters. Also, paired-end reads and even colorspace data
is supported. If you want, you can also just demultiplex your input
data, without removing adapter sequences at all.
Cutadapt comes with an extensive suite of automated tests and is
available under the terms of the MIT license.
If you use cutadapt, please cite:
Marcel Martin. Cutadapt removes adapter sequences from high-throughput
sequencing reads. EMBnet.journal, 17(1):10-12, May 2011. DOI:
http://dx.doi.org/10.14806/ej.17.1.200