Branch:
bedlam-name-fixes
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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Heinz Wiesinger
63daf9f79a
All: Support $PRINT_PACKAGE_NAME env var
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2 years ago | |
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| README | c732454ecf academic/cistrome-CEAS: Added (Cis-regulatory Element Annotation). | 10 years ago |
| References | c732454ecf academic/cistrome-CEAS: Added (Cis-regulatory Element Annotation). | 10 years ago |
| cistrome-CEAS.SlackBuild | 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var | 2 years ago |
| cistrome-CEAS.info | 4f02983cea academic/cistrome-CEAS: updated download link and misc cleanups | 4 years ago |
| slack-desc | c732454ecf academic/cistrome-CEAS: Added (Cis-regulatory Element Annotation). | 10 years ago |
README
CEAS: Cis-regulatory Element Annotation System
This is a tool designed to characterize genome-wide protein-DNA
interaction patterns from ChIP-chip and ChIP-Seq of both sharp and
broad binding factors. As a stand-alone extension of our web
application CEAS, it provides statistics on ChIP enrichment at
important genome features such as specific chromosome, promoters, gene
bodies, or exons, and infers genes most likely to be regulated by a
binding factor. CEAS also enables biologists to visualize the average
ChIP enrichment signals over specific genomic features, allowing
continuous and broad ChIP enrichment to be perceived which might be
too subtle to detect from ChIP peaks alone.
A recommended package to install is R.
This is a tool designed to characterize genome-wide protein-DNA
interaction patterns from ChIP-chip and ChIP-Seq of both sharp and
broad binding factors. As a stand-alone extension of our web
application CEAS, it provides statistics on ChIP enrichment at
important genome features such as specific chromosome, promoters, gene
bodies, or exons, and infers genes most likely to be regulated by a
binding factor. CEAS also enables biologists to visualize the average
ChIP enrichment signals over specific genomic features, allowing
continuous and broad ChIP enrichment to be perceived which might be
too subtle to detect from ChIP peaks alone.
A recommended package to install is R.