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- diff --git a/Demo/Makefile.am b/Demo/Makefile.am
- new file mode 100644
- --- /dev/null
- +++ b/Demo/Makefile.am
- @@ -0,0 +1,115 @@
- +AM_CPPFLAGS = -I$(top_srcdir)/Include $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
- +
- +EXTRA_DIST = \
- + README.txt \
- + qrdemo_out.txt \
- + qrdemoc_out.txt
- +
- +check_PROGRAMS = \
- + qrsimple \
- + qrsimplec \
- + qrdemo \
- + qrdemoc
- +
- +qrsimple_SOURCES = qrsimple.cpp
- +qrsimple_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS)
- +
- +qrsimplec_SOURCES = qrsimplec.c
- +qrsimplec_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS)
- +
- +qrdemo_SOURCES = qrdemo.cpp
- +qrdemo_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS)
- +
- +qrdemoc_SOURCES = qrdemoc.c
- +qrdemoc_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS)
- +
- +MATRICES = \
- + $(top_srcdir)/Matrix/GD01_b.mtx \
- + $(top_srcdir)/Matrix/GD06_theory.mtx \
- + $(top_srcdir)/Matrix/GD98_a.mtx \
- + $(top_srcdir)/Matrix/LFAT5.mtx \
- + $(top_srcdir)/Matrix/Ragusa16.mtx \
- + $(top_srcdir)/Matrix/Tina_AskCal.mtx \
- + $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx \
- + $(top_srcdir)/Matrix/a0.mtx \
- + $(top_srcdir)/Matrix/a04.mtx \
- + $(top_srcdir)/Matrix/a1.mtx \
- + $(top_srcdir)/Matrix/a2.mtx \
- + $(top_srcdir)/Matrix/a4.mtx \
- + $(top_srcdir)/Matrix/ash219.mtx \
- + $(top_srcdir)/Matrix/b1_ss.mtx \
- + $(top_srcdir)/Matrix/bcspwr01.mtx \
- + $(top_srcdir)/Matrix/bfwa62.mtx \
- + $(top_srcdir)/Matrix/c2.mtx \
- + $(top_srcdir)/Matrix/c32.mtx \
- + $(top_srcdir)/Matrix/lfat5b.mtx \
- + $(top_srcdir)/Matrix/lp_share1b.mtx \
- + $(top_srcdir)/Matrix/lpi_galenet.mtx \
- + $(top_srcdir)/Matrix/lpi_itest6.mtx \
- + $(top_srcdir)/Matrix/r2.mtx \
- + $(top_srcdir)/Matrix/s32.mtx \
- + $(top_srcdir)/Matrix/west0067.mtx \
- + $(top_srcdir)/Matrix/young1c.mtx \
- + $(top_srcdir)/Matrix/lp_e226_transposed.mtx
- +
- +check-local: $(check_PROGRAMS) $(MATRICES)
- + -./qrsimple < $(top_srcdir)/Matrix/ash219.mtx
- + -./qrsimplec < $(top_srcdir)/Matrix/ash219.mtx
- + -./qrsimple < $(top_srcdir)/Matrix/west0067.mtx
- + -./qrsimplec < $(top_srcdir)/Matrix/west0067.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/a2.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/r2.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/a04.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/a2.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/west0067.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/c2.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/a0.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/lfat5b.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/bfwa62.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/LFAT5.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/b1_ss.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/bcspwr01.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/lpi_galenet.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/lpi_itest6.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/ash219.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/a4.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/s32.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/c32.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/lp_share1b.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/a1.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/GD06_theory.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/GD01_b.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/GD98_a.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/Ragusa16.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/young1c.mtx
- + -./qrdemo < $(top_srcdir)/Matrix/lp_e226_transposed.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/a2.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/r2.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/a04.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/a2.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/west0067.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/c2.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/a0.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/lfat5b.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/bfwa62.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/LFAT5.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/b1_ss.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/bcspwr01.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/lpi_galenet.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/lpi_itest6.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/ash219.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/a4.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/s32.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/c32.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/lp_share1b.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/a1.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/GD06_theory.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/GD01_b.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/GD98_a.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/Ragusa16.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/young1c.mtx
- + -./qrdemoc < $(top_srcdir)/Matrix/lp_e226_transposed.mtx
- diff --git a/Doc/Makefile.am b/Doc/Makefile.am
- new file mode 100644
- --- /dev/null
- +++ b/Doc/Makefile.am
- @@ -0,0 +1,29 @@
- +EXTRA_DIST = \
- + ChangeLog \
- + License.txt \
- + README.txt \
- + gpl.txt
- +
- +dist_noinst_DATA = \
- + spqr_user_guide.tex \
- + spqr_user_guide.bib
- +
- +dist_pdf_DATA = \
- + spqr_user_guide.pdf \
- + algo_spqr.pdf \
- + spqr.pdf
- +
- +TEX = TEXINPUTS="$(srcdir):" pdflatex -interaction nonstopmode -file-line-error
- +BIB = BIBINPUTS="$(srcdir):" bibtex
- +%.pdf: %.tex %.bbl
- + $(TEX) $*
- + while grep -q "Rerun to get cross-references right" $*.log; do \
- + $(TEX) $*; \
- + done
- +%.bbl: %.aux %.bib
- + $(BIB) $*
- +%.aux: %.tex
- + $(TEX) $*
- +
- +CLEANFILES = *.aux *.bbl *.blg *.log *.toc
- +MAINTAINERCLEANFILES = $(dist_pdf_DATA)
- diff --git a/Include/Makefile.am b/Include/Makefile.am
- new file mode 100644
- --- /dev/null
- +++ b/Include/Makefile.am
- @@ -0,0 +1,5 @@
- +pkginclude_HEADERS = \
- + SuiteSparseQR.hpp \
- + SuiteSparseQR_C.h \
- + SuiteSparseQR_definitions.h \
- + spqr.hpp
- diff --git a/Makefile.am b/Makefile.am
- new file mode 100644
- --- /dev/null
- +++ b/Makefile.am
- @@ -0,0 +1,9 @@
- +ACLOCAL_AMFLAGS = -I m4
- +
- +SUBDIRS = Include Source Matrix Demo Tcov Doc
- +EXTRA_DIST = README.txt
- +
- +pkgconfig_DATA = spqr.pc
- +
- +CODE_COVERAGE_BRANCH_COVERAGE = 1
- +@CODE_COVERAGE_RULES@
- diff --git a/Matrix/Makefile.am b/Matrix/Makefile.am
- new file mode 100644
- --- /dev/null
- +++ b/Matrix/Makefile.am
- @@ -0,0 +1,36 @@
- +EXTRA_DIST = \
- + README.txt
- +
- +dist_noinst_DATA = \
- + GD01_b.mtx \
- + GD06_theory.mtx \
- + GD98_a.mtx \
- + LFAT5.mtx \
- + Ragusa16.mtx \
- + Tina_AskCal.mtx \
- + Tina_AskCal_perm.mtx \
- + a0.mtx \
- + a04.mtx \
- + a1.mtx \
- + a2.mtx \
- + a4.mtx \
- + arrow.mtx \
- + ash219.mtx \
- + b1_ss.mtx \
- + bcspwr01.mtx \
- + bfwa62.mtx \
- + c2.mtx \
- + c32.mtx \
- + lfat5b.mtx \
- + lp_share1b.mtx \
- + lpi_galenet.mtx \
- + lpi_itest6.mtx \
- + pwr01b.mtx \
- + r2.mtx \
- + s32.mtx \
- + west0067.mtx \
- + young1c.mtx \
- + Franz6_id1959_aug.mtx \
- + Groebner_id2003_aug.mtx \
- + lp_e226.mtx \
- + lp_e226_transposed.mtx
- diff --git a/Source/Makefile.am b/Source/Makefile.am
- new file mode 100644
- --- /dev/null
- +++ b/Source/Makefile.am
- @@ -0,0 +1,56 @@
- +AM_CPPFLAGS = -I$(top_srcdir)/Include $(TBB_CFLAGS) $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
- +if !EXPERT
- +AM_CPPFLAGS += -DNEXPERT
- +endif
- +if TBB
- +AM_CPPFLAGS += -DHAVE_TBB
- +endif
- +
- +lib_LTLIBRARIES = libspqr.la
- +
- +libspqr_la_SOURCES = \
- + SuiteSparseQR.cpp \
- + SuiteSparseQR_C.cpp \
- + SuiteSparseQR_expert.cpp \
- + SuiteSparseQR_qmult.cpp \
- + spqr_1colamd.cpp \
- + spqr_1factor.cpp \
- + spqr_1fixed.cpp \
- + spqr_analyze.cpp \
- + spqr_append.cpp \
- + spqr_assemble.cpp \
- + spqr_cpack.cpp \
- + spqr_csize.cpp \
- + spqr_cumsum.cpp \
- + spqr_debug.cpp \
- + spqr_factorize.cpp \
- + spqr_fcsize.cpp \
- + spqr_freefac.cpp \
- + spqr_freenum.cpp \
- + spqr_freesym.cpp \
- + spqr_front.cpp \
- + spqr_fsize.cpp \
- + spqr_happly.cpp \
- + spqr_happly_work.cpp \
- + spqr_hpinv.cpp \
- + spqr_kernel.cpp \
- + spqr_larftb.cpp \
- + spqr_maxcolnorm.cpp \
- + spqr_panel.cpp \
- + spqr_parallel.cpp \
- + spqr_rconvert.cpp \
- + spqr_rcount.cpp \
- + spqr_rhpack.cpp \
- + spqr_rmap.cpp \
- + spqr_rsolve.cpp \
- + spqr_shift.cpp \
- + spqr_stranspose1.cpp \
- + spqr_stranspose2.cpp \
- + spqr_tol.cpp \
- + spqr_trapezoidal.cpp \
- + spqr_type.cpp
- +
- +libspqr_la_LIBADD = $(TBB_LIBS) $(CHOLMOD_LIBS) $(SUITESPARSECONFIG_LIBS) $(LAPACK_LIBS) $(BLAS_LIBS) -lm $(CODE_COVERAGE_LIBS)
- +libspqr_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS)
- +libspqr_la_CXXFLAGS = $(AM_CXXFLAGS) $(CODE_COVERAGE_CXXFLAGS)
- +libspqr_la_LDFLAGS = -no-undefined -release $(PACKAGE_VERSION)
- diff --git a/Tcov/Makefile.am b/Tcov/Makefile.am
- new file mode 100644
- --- /dev/null
- +++ b/Tcov/Makefile.am
- @@ -0,0 +1,52 @@
- +AM_CPPFLAGS = -I$(top_srcdir)/Include $(CHOLMOD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS)
- +
- +EXTRA_DIST = \
- + README.txt
- +
- +dist_noinst_DATA = \
- + matrix1.txt \
- + matrixlist.txt
- +
- +if CODE_COVERAGE_ENABLED
- +check_PROGRAMS = \
- + qrtest
- +
- +qrtest_SOURCES = qrtestc.c qrtest.cpp
- +qrtest_LDADD = $(top_builddir)/Source/libspqr.la $(CHOLMOD_LIBS) $(SUITESPARSECONFIG_LIBS)
- +
- +MATRICES = \
- + $(srcdir)/matrix1.txt \
- + $(srcdir)/matrixlist.txt \
- + $(top_srcdir)/Matrix/GD01_b.mtx \
- + $(top_srcdir)/Matrix/GD06_theory.mtx \
- + $(top_srcdir)/Matrix/GD98_a.mtx \
- + $(top_srcdir)/Matrix/LFAT5.mtx \
- + $(top_srcdir)/Matrix/Ragusa16.mtx \
- + $(top_srcdir)/Matrix/Tina_AskCal.mtx \
- + $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx \
- + $(top_srcdir)/Matrix/a0.mtx \
- + $(top_srcdir)/Matrix/a04.mtx \
- + $(top_srcdir)/Matrix/a1.mtx \
- + $(top_srcdir)/Matrix/a2.mtx \
- + $(top_srcdir)/Matrix/a4.mtx \
- + $(top_srcdir)/Matrix/arrow.mtx \
- + $(top_srcdir)/Matrix/ash219.mtx \
- + $(top_srcdir)/Matrix/b1_ss.mtx \
- + $(top_srcdir)/Matrix/bcspwr01.mtx \
- + $(top_srcdir)/Matrix/bfwa62.mtx \
- + $(top_srcdir)/Matrix/c2.mtx \
- + $(top_srcdir)/Matrix/c32.mtx \
- + $(top_srcdir)/Matrix/lfat5b.mtx \
- + $(top_srcdir)/Matrix/lp_share1b.mtx \
- + $(top_srcdir)/Matrix/lpi_galenet.mtx \
- + $(top_srcdir)/Matrix/lpi_itest6.mtx \
- + $(top_srcdir)/Matrix/r2.mtx \
- + $(top_srcdir)/Matrix/s32.mtx \
- + $(top_srcdir)/Matrix/west0067.mtx
- +
- +check-local: $(check_PROGRAMS) $(MATRICES)
- + ./qrtest $(srcdir)/matrixlist.txt > qrtest_out.txt
- + ./qrtest $(srcdir)/matrix1.txt > qrtest_out1.txt
- +endif
- +
- +CLEANFILES = qrtest_out.txt qrtest_out1.txt
- diff --git a/configure.ac b/configure.ac
- new file mode 100644
- --- /dev/null
- +++ b/configure.ac
- @@ -0,0 +1,119 @@
- +# -*- Autoconf -*-
- +# Process this file with autoconf to produce a configure script.
- +
- +AC_PREREQ([2.69])
- +AC_INIT([SPQR],[2.0.9],[https://github.com/DrTimothyAldenDavis/SuiteSparse],[spqr],[http://www.suitesparse.com/])
- +AC_CONFIG_SRCDIR([Source/spqr_kernel.cpp])
- +AC_CONFIG_AUX_DIR([build-aux])
- +AC_CONFIG_MACRO_DIR([m4])
- +AC_CONFIG_HEADERS([config.h])
- +AM_INIT_AUTOMAKE([foreign])
- +AM_SILENT_RULES([yes])
- +LT_INIT([disable-static])
- +
- +# Checks for programs.
- +PKG_PROG_PKG_CONFIG
- +AC_PROG_INSTALL
- +AC_PROG_F77
- +AC_PROG_CC
- +AC_PROG_CXX
- +AC_LANG([C++])
- +AX_CODE_COVERAGE
- +
- +AC_ARG_ENABLE([expert],
- + [AS_HELP_STRING(
- + [--disable-expert],
- + [compile without the min 2-norm solution option])],
- + [],
- + [AS_VAR_SET([enable_expert], [yes])])
- +
- +AC_ARG_WITH([tbb],
- + [AS_HELP_STRING(
- + [--without-tbb],
- + [do not use Intel Threading Building Blocks for multithreading])],
- + [],
- + [AS_VAR_SET([with_tbb], [yes])])
- +
- +AS_VAR_SET([LIBS_SAVED], [$LIBS])
- +
- +# Checks for libraries.
- +AC_CHECK_LIB([m], [sqrt])
- +
- +AX_BLAS(
- + [],
- + [AC_MSG_ERROR([cannot find BLAS])])
- +
- +AX_LAPACK(
- + [],
- + [AC_MSG_ERROR([cannot find LAPACK])])
- +
- +PKG_CHECK_MODULES([SUITESPARSECONFIG], [suitesparseconfig])
- +PKG_CHECK_MODULES([CHOLMOD], [cholmod])
- +
- +# Checks for header files.
- +AC_CHECK_HEADERS([float.h stdlib.h])
- +
- +AS_IF([test "x$with_tbb" = "xyes"], [
- + AC_CHECK_HEADERS([tbb/task_scheduler_init.h tbb/task.h])
- +])
- +
- +# Checks for typedefs, structures, and compiler characteristics.
- +AC_TYPE_SIZE_T
- +
- +# Checks for library functions.
- +AC_CHECK_FUNCS([sqrt])
- +
- +AS_VAR_SET([LIBS], [$LIBS_SAVED])
- +
- +AS_IF([test "x$with_tbb" = "xyes"], [
- + AC_SUBST([TBB_CFLAGS], [""])
- + AC_SUBST([TBB_LIBS], ["-ltbb"])
- +])
- +
- +AC_MSG_CHECKING([whether to use expert routines])
- +AC_MSG_RESULT([$enable_expert])
- +AM_CONDITIONAL([EXPERT], [test "x$enable_expert" = "xyes"])
- +
- +AC_MSG_CHECKING([whether to use Intel Threading Building Blocks])
- +AC_MSG_RESULT([$with_tbb])
- +AM_CONDITIONAL([TBB], [test "x$with_tbb" = "xyes"])
- +
- +m4_ifdef([PKG_INSTALLDIR], [PKG_INSTALLDIR], [AC_SUBST([pkgconfigdir], [${libdir}/pkgconfig])])
- +AC_CONFIG_FILES([
- + spqr.pc
- + Makefile
- + Demo/Makefile
- + Doc/Makefile
- + Include/Makefile
- + Matrix/Makefile
- + Source/Makefile
- + Tcov/Makefile
- +])
- +#AC_CONFIG_LINKS([Matrix:Matrix]) # Can't link an entire directory?
- +AC_CONFIG_LINKS([Matrix/GD01_b.mtx:Matrix/GD01_b.mtx])
- +AC_CONFIG_LINKS([Matrix/GD06_theory.mtx:Matrix/GD06_theory.mtx])
- +AC_CONFIG_LINKS([Matrix/GD98_a.mtx:Matrix/GD98_a.mtx])
- +AC_CONFIG_LINKS([Matrix/LFAT5.mtx:Matrix/LFAT5.mtx])
- +AC_CONFIG_LINKS([Matrix/Ragusa16.mtx:Matrix/Ragusa16.mtx])
- +AC_CONFIG_LINKS([Matrix/Tina_AskCal.mtx:Matrix/Tina_AskCal.mtx])
- +AC_CONFIG_LINKS([Matrix/Tina_AskCal_perm.mtx:Matrix/Tina_AskCal_perm.mtx])
- +AC_CONFIG_LINKS([Matrix/a0.mtx:Matrix/a0.mtx])
- +AC_CONFIG_LINKS([Matrix/a04.mtx:Matrix/a04.mtx])
- +AC_CONFIG_LINKS([Matrix/a1.mtx:Matrix/a1.mtx])
- +AC_CONFIG_LINKS([Matrix/a2.mtx:Matrix/a2.mtx])
- +AC_CONFIG_LINKS([Matrix/a4.mtx:Matrix/a4.mtx])
- +AC_CONFIG_LINKS([Matrix/arrow.mtx:Matrix/arrow.mtx])
- +AC_CONFIG_LINKS([Matrix/ash219.mtx:Matrix/ash219.mtx])
- +AC_CONFIG_LINKS([Matrix/b1_ss.mtx:Matrix/b1_ss.mtx])
- +AC_CONFIG_LINKS([Matrix/bcspwr01.mtx:Matrix/bcspwr01.mtx])
- +AC_CONFIG_LINKS([Matrix/bfwa62.mtx:Matrix/bfwa62.mtx])
- +AC_CONFIG_LINKS([Matrix/c2.mtx:Matrix/c2.mtx])
- +AC_CONFIG_LINKS([Matrix/c32.mtx:Matrix/c32.mtx])
- +AC_CONFIG_LINKS([Matrix/lfat5b.mtx:Matrix/lfat5b.mtx])
- +AC_CONFIG_LINKS([Matrix/lp_share1b.mtx:Matrix/lp_share1b.mtx])
- +AC_CONFIG_LINKS([Matrix/lpi_galenet.mtx:Matrix/lpi_galenet.mtx])
- +AC_CONFIG_LINKS([Matrix/lpi_itest6.mtx:Matrix/lpi_itest6.mtx])
- +AC_CONFIG_LINKS([Matrix/r2.mtx:Matrix/r2.mtx])
- +AC_CONFIG_LINKS([Matrix/s32.mtx:Matrix/s32.mtx])
- +AC_CONFIG_LINKS([Matrix/west0067.mtx:Matrix/west0067.mtx])
- +AC_OUTPUT
- diff --git a/m4/ax_blas.m4 b/m4/ax_blas.m4
- new file mode 100644
- --- /dev/null
- +++ b/m4/ax_blas.m4
- @@ -0,0 +1,241 @@
- +# ===========================================================================
- +# https://www.gnu.org/software/autoconf-archive/ax_blas.html
- +# ===========================================================================
- +#
- +# SYNOPSIS
- +#
- +# AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
- +#
- +# DESCRIPTION
- +#
- +# This macro looks for a library that implements the BLAS linear-algebra
- +# interface (see http://www.netlib.org/blas/). On success, it sets the
- +# BLAS_LIBS output variable to hold the requisite library linkages.
- +#
- +# To link with BLAS, you should link with:
- +#
- +# $BLAS_LIBS $LIBS $FLIBS
- +#
- +# in that order. FLIBS is the output variable of the
- +# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
- +# sometimes necessary in order to link with F77 libraries. Users will also
- +# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
- +# reason.
- +#
- +# Many libraries are searched for, from ATLAS to CXML to ESSL. The user
- +# may also use --with-blas=<lib> in order to use some specific BLAS
- +# library <lib>. In order to link successfully, however, be aware that you
- +# will probably need to use the same Fortran compiler (which can be set
- +# via the F77 env. var.) as was used to compile the BLAS library.
- +#
- +# ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is
- +# found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is
- +# not found. If ACTION-IF-FOUND is not specified, the default action will
- +# define HAVE_BLAS.
- +#
- +# LICENSE
- +#
- +# Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu>
- +# Copyright (c) 2019 Geoffrey M. Oxberry <goxberry@gmail.com>
- +#
- +# This program is free software: you can redistribute it and/or modify it
- +# under the terms of the GNU General Public License as published by the
- +# Free Software Foundation, either version 3 of the License, or (at your
- +# option) any later version.
- +#
- +# This program is distributed in the hope that it will be useful, but
- +# WITHOUT ANY WARRANTY; without even the implied warranty of
- +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
- +# Public License for more details.
- +#
- +# You should have received a copy of the GNU General Public License along
- +# with this program. If not, see <https://www.gnu.org/licenses/>.
- +#
- +# As a special exception, the respective Autoconf Macro's copyright owner
- +# gives unlimited permission to copy, distribute and modify the configure
- +# scripts that are the output of Autoconf when processing the Macro. You
- +# need not follow the terms of the GNU General Public License when using
- +# or distributing such scripts, even though portions of the text of the
- +# Macro appear in them. The GNU General Public License (GPL) does govern
- +# all other use of the material that constitutes the Autoconf Macro.
- +#
- +# This special exception to the GPL applies to versions of the Autoconf
- +# Macro released by the Autoconf Archive. When you make and distribute a
- +# modified version of the Autoconf Macro, you may extend this special
- +# exception to the GPL to apply to your modified version as well.
- +
- +#serial 17
- +
- +AU_ALIAS([ACX_BLAS], [AX_BLAS])
- +AC_DEFUN([AX_BLAS], [
- +AC_PREREQ([2.55])
- +AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
- +AC_REQUIRE([AC_CANONICAL_HOST])
- +ax_blas_ok=no
- +
- +AC_ARG_WITH(blas,
- + [AS_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
- +case $with_blas in
- + yes | "") ;;
- + no) ax_blas_ok=disable ;;
- + -* | */* | *.a | *.so | *.so.* | *.dylib | *.dylib.* | *.o)
- + BLAS_LIBS="$with_blas"
- + ;;
- + *) BLAS_LIBS="-l$with_blas" ;;
- +esac
- +
- +# Get fortran linker names of BLAS functions to check for.
- +AC_F77_FUNC(sgemm)
- +AC_F77_FUNC(dgemm)
- +
- +ax_blas_save_LIBS="$LIBS"
- +LIBS="$LIBS $FLIBS"
- +
- +# First, check BLAS_LIBS environment variable
- +if test $ax_blas_ok = no; then
- +if test "x$BLAS_LIBS" != x; then
- + save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
- + AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
- + AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes], [BLAS_LIBS=""])
- + AC_MSG_RESULT($ax_blas_ok)
- + LIBS="$save_LIBS"
- +fi
- +fi
- +
- +# BLAS linked to by default? (happens on some supercomputers)
- +if test $ax_blas_ok = no; then
- + save_LIBS="$LIBS"; LIBS="$LIBS"
- + AC_MSG_CHECKING([if $sgemm is being linked in already])
- + AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes])
- + AC_MSG_RESULT($ax_blas_ok)
- + LIBS="$save_LIBS"
- +fi
- +
- +# BLAS in OpenBLAS library? (http://xianyi.github.com/OpenBLAS/)
- +if test $ax_blas_ok = no; then
- + AC_CHECK_LIB(openblas, $sgemm, [ax_blas_ok=yes
- + BLAS_LIBS="-lopenblas"])
- +fi
- +
- +# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
- +if test $ax_blas_ok = no; then
- + AC_CHECK_LIB(atlas, ATL_xerbla,
- + [AC_CHECK_LIB(f77blas, $sgemm,
- + [AC_CHECK_LIB(cblas, cblas_dgemm,
- + [ax_blas_ok=yes
- + BLAS_LIBS="-lcblas -lf77blas -latlas"],
- + [], [-lf77blas -latlas])],
- + [], [-latlas])])
- +fi
- +
- +# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
- +if test $ax_blas_ok = no; then
- + AC_CHECK_LIB(blas, $sgemm,
- + [AC_CHECK_LIB(dgemm, $dgemm,
- + [AC_CHECK_LIB(sgemm, $sgemm,
- + [ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
- + [], [-lblas])],
- + [], [-lblas])])
- +fi
- +
- +# BLAS in Intel MKL library?
- +if test $ax_blas_ok = no; then
- + # MKL for gfortran
- + if test x"$ac_cv_fc_compiler_gnu" = xyes; then
- + # 64 bit
- + if test $host_cpu = x86_64; then
- + AC_CHECK_LIB(mkl_gf_lp64, $sgemm,
- + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
- + [-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread])
- + # 32 bit
- + elif test $host_cpu = i686; then
- + AC_CHECK_LIB(mkl_gf, $sgemm,
- + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf -lmkl_sequential -lmkl_core -lpthread"],,
- + [-lmkl_gf -lmkl_sequential -lmkl_core -lpthread])
- + fi
- + # MKL for other compilers (Intel, PGI, ...?)
- + else
- + # 64-bit
- + if test $host_cpu = x86_64; then
- + AC_CHECK_LIB(mkl_intel_lp64, $sgemm,
- + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
- + [-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread])
- + # 32-bit
- + elif test $host_cpu = i686; then
- + AC_CHECK_LIB(mkl_intel, $sgemm,
- + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel -lmkl_sequential -lmkl_core -lpthread"],,
- + [-lmkl_intel -lmkl_sequential -lmkl_core -lpthread])
- + fi
- + fi
- +fi
- +# Old versions of MKL
- +if test $ax_blas_ok = no; then
- + AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl -lguide -lpthread"],,[-lguide -lpthread])
- +fi
- +
- +# BLAS in Apple vecLib library?
- +if test $ax_blas_ok = no; then
- + save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS"
- + AC_MSG_CHECKING([for $sgemm in -framework vecLib])
- + AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"])
- + AC_MSG_RESULT($ax_blas_ok)
- + LIBS="$save_LIBS"
- +fi
- +
- +# BLAS in Alpha CXML library?
- +if test $ax_blas_ok = no; then
- + AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"])
- +fi
- +
- +# BLAS in Alpha DXML library? (now called CXML, see above)
- +if test $ax_blas_ok = no; then
- + AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"])
- +fi
- +
- +# BLAS in Sun Performance library?
- +if test $ax_blas_ok = no; then
- + if test "x$GCC" != xyes; then # only works with Sun CC
- + AC_CHECK_LIB(sunmath, acosp,
- + [AC_CHECK_LIB(sunperf, $sgemm,
- + [BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
- + ax_blas_ok=yes],[],[-lsunmath])])
- + fi
- +fi
- +
- +# BLAS in SCSL library? (SGI/Cray Scientific Library)
- +if test $ax_blas_ok = no; then
- + AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"])
- +fi
- +
- +# BLAS in SGIMATH library?
- +if test $ax_blas_ok = no; then
- + AC_CHECK_LIB(complib.sgimath, $sgemm,
- + [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
- +fi
- +
- +# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
- +if test $ax_blas_ok = no; then
- + AC_CHECK_LIB(blas, $sgemm,
- + [AC_CHECK_LIB(essl, $sgemm,
- + [ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
- + [], [-lblas $FLIBS])])
- +fi
- +
- +# Generic BLAS library?
- +if test $ax_blas_ok = no; then
- + AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"])
- +fi
- +
- +AC_SUBST(BLAS_LIBS)
- +
- +LIBS="$ax_blas_save_LIBS"
- +
- +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
- +if test x"$ax_blas_ok" = xyes; then
- + ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
- + :
- +else
- + ax_blas_ok=no
- + $2
- +fi
- +])dnl AX_BLAS
- diff --git a/m4/ax_code_coverage.m4 b/m4/ax_code_coverage.m4
- new file mode 100644
- --- /dev/null
- +++ b/m4/ax_code_coverage.m4
- @@ -0,0 +1,271 @@
- +# ===========================================================================
- +# https://www.gnu.org/software/autoconf-archive/ax_code_coverage.html
- +# ===========================================================================
- +#
- +# SYNOPSIS
- +#
- +# AX_CODE_COVERAGE()
- +#
- +# DESCRIPTION
- +#
- +# Defines CODE_COVERAGE_CPPFLAGS, CODE_COVERAGE_CFLAGS,
- +# CODE_COVERAGE_CXXFLAGS and CODE_COVERAGE_LIBS which should be included
- +# in the CPPFLAGS, CFLAGS CXXFLAGS and LIBS/LIBADD variables of every
- +# build target (program or library) which should be built with code
- +# coverage support. Also defines CODE_COVERAGE_RULES which should be
- +# substituted in your Makefile; and $enable_code_coverage which can be
- +# used in subsequent configure output. CODE_COVERAGE_ENABLED is defined
- +# and substituted, and corresponds to the value of the
- +# --enable-code-coverage option, which defaults to being disabled.
- +#
- +# Test also for gcov program and create GCOV variable that could be
- +# substituted.
- +#
- +# Note that all optimization flags in CFLAGS must be disabled when code
- +# coverage is enabled.
- +#
- +# Usage example:
- +#
- +# configure.ac:
- +#
- +# AX_CODE_COVERAGE
- +#
- +# Makefile.am:
- +#
- +# @CODE_COVERAGE_RULES@
- +# my_program_LIBS = ... $(CODE_COVERAGE_LIBS) ...
- +# my_program_CPPFLAGS = ... $(CODE_COVERAGE_CPPFLAGS) ...
- +# my_program_CFLAGS = ... $(CODE_COVERAGE_CFLAGS) ...
- +# my_program_CXXFLAGS = ... $(CODE_COVERAGE_CXXFLAGS) ...
- +#
- +# This results in a "check-code-coverage" rule being added to any
- +# Makefile.am which includes "@CODE_COVERAGE_RULES@" (assuming the module
- +# has been configured with --enable-code-coverage). Running `make
- +# check-code-coverage` in that directory will run the module's test suite
- +# (`make check`) and build a code coverage report detailing the code which
- +# was touched, then print the URI for the report.
- +#
- +# In earlier versions of this macro, CODE_COVERAGE_LDFLAGS was defined
- +# instead of CODE_COVERAGE_LIBS. They are both still defined, but use of
- +# CODE_COVERAGE_LIBS is preferred for clarity; CODE_COVERAGE_LDFLAGS is
- +# deprecated. They have the same value.
- +#
- +# This code was derived from Makefile.decl in GLib, originally licenced
- +# under LGPLv2.1+.
- +#
- +# LICENSE
- +#
- +# Copyright (c) 2012, 2016 Philip Withnall
- +# Copyright (c) 2012 Xan Lopez
- +# Copyright (c) 2012 Christian Persch
- +# Copyright (c) 2012 Paolo Borelli
- +# Copyright (c) 2012 Dan Winship
- +# Copyright (c) 2015 Bastien ROUCARIES
- +#
- +# This library is free software; you can redistribute it and/or modify it
- +# under the terms of the GNU Lesser General Public License as published by
- +# the Free Software Foundation; either version 2.1 of the License, or (at
- +# your option) any later version.
- +#
- +# This library is distributed in the hope that it will be useful, but
- +# WITHOUT ANY WARRANTY; without even the implied warranty of
- +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser
- +# General Public License for more details.
- +#
- +# You should have received a copy of the GNU Lesser General Public License
- +# along with this program. If not, see <https://www.gnu.org/licenses/>.
- +
- +#serial 27
- +
- +AC_DEFUN([_AX_CODE_COVERAGE_ENABLED],[
- + # check for gcov
- + AC_CHECK_TOOL([GCOV],
- + [$_AX_CODE_COVERAGE_GCOV_PROG_WITH],
- + [:])
- + AS_IF([test "X$GCOV" = "X:"],
- + [AC_MSG_ERROR([gcov is needed to do coverage])])
- + AC_SUBST([GCOV])
- +
- + dnl Check if gcc is being used
- + AS_IF([ test "$GCC" = "no" ], [
- + AC_MSG_ERROR([not compiling with gcc, which is required for gcov code coverage])
- + ])
- +
- + AC_CHECK_PROG([LCOV], [lcov], [lcov])
- + AC_CHECK_PROG([GENHTML], [genhtml], [genhtml])
- +
- + AS_IF([ test x"$LCOV" = x ], [
- + AC_MSG_ERROR([To enable code coverage reporting you must have lcov installed])
- + ])
- +
- + AS_IF([ test x"$GENHTML" = x ], [
- + AC_MSG_ERROR([Could not find genhtml from the lcov package])
- + ])
- +
- + dnl Build the code coverage flags
- + dnl Define CODE_COVERAGE_LDFLAGS for backwards compatibility
- + CODE_COVERAGE_CPPFLAGS="-DNDEBUG"
- + CODE_COVERAGE_CFLAGS="-O0 -g -fprofile-arcs -ftest-coverage"
- + CODE_COVERAGE_CXXFLAGS="-O0 -g -fprofile-arcs -ftest-coverage"
- + CODE_COVERAGE_LIBS="-lgcov"
- + CODE_COVERAGE_LDFLAGS="$CODE_COVERAGE_LIBS"
- +
- + AC_SUBST([CODE_COVERAGE_CPPFLAGS])
- + AC_SUBST([CODE_COVERAGE_CFLAGS])
- + AC_SUBST([CODE_COVERAGE_CXXFLAGS])
- + AC_SUBST([CODE_COVERAGE_LIBS])
- + AC_SUBST([CODE_COVERAGE_LDFLAGS])
- +
- + [CODE_COVERAGE_RULES_CHECK='
- + -$(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) -k check
- + $(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) code-coverage-capture
- +']
- + [CODE_COVERAGE_RULES_CAPTURE='
- + $(code_coverage_v_lcov_cap)$(LCOV) $(code_coverage_quiet) $(addprefix --directory ,$(CODE_COVERAGE_DIRECTORY)) --capture --output-file "$(CODE_COVERAGE_OUTPUT_FILE).tmp" --test-name "$(call code_coverage_sanitize,$(PACKAGE_NAME)-$(PACKAGE_VERSION))" --no-checksum --compat-libtool $(CODE_COVERAGE_LCOV_SHOPTS) $(CODE_COVERAGE_LCOV_OPTIONS)
- + $(code_coverage_v_lcov_ign)$(LCOV) $(code_coverage_quiet) $(addprefix --directory ,$(CODE_COVERAGE_DIRECTORY)) --remove "$(CODE_COVERAGE_OUTPUT_FILE).tmp" "/tmp/*" $(CODE_COVERAGE_IGNORE_PATTERN) --output-file "$(CODE_COVERAGE_OUTPUT_FILE)" $(CODE_COVERAGE_LCOV_SHOPTS) $(CODE_COVERAGE_LCOV_RMOPTS)
- + -@rm -f $(CODE_COVERAGE_OUTPUT_FILE).tmp
- + $(code_coverage_v_genhtml)LANG=C $(GENHTML) $(code_coverage_quiet) $(addprefix --prefix ,$(CODE_COVERAGE_DIRECTORY)) --output-directory "$(CODE_COVERAGE_OUTPUT_DIRECTORY)" --title "$(PACKAGE_NAME)-$(PACKAGE_VERSION) Code Coverage" --legend --show-details "$(CODE_COVERAGE_OUTPUT_FILE)" $(CODE_COVERAGE_GENHTML_OPTIONS)
- + @echo "file://$(abs_builddir)/$(CODE_COVERAGE_OUTPUT_DIRECTORY)/index.html"
- +']
- + [CODE_COVERAGE_RULES_CLEAN='
- +clean: code-coverage-clean
- +distclean: code-coverage-clean
- +code-coverage-clean:
- + -$(LCOV) --directory $(top_builddir) -z
- + -rm -rf $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_FILE).tmp $(CODE_COVERAGE_OUTPUT_DIRECTORY)
- + -find . \( -name "*.gcda" -o -name "*.gcno" -o -name "*.gcov" \) -delete
- +']
- +])
- +
- +AC_DEFUN([_AX_CODE_COVERAGE_DISABLED],[
- + [CODE_COVERAGE_RULES_CHECK='
- + @echo "Need to reconfigure with --enable-code-coverage"
- + ']
- + CODE_COVERAGE_RULES_CAPTURE="$CODE_COVERAGE_RULES_CHECK"
- + CODE_COVERAGE_RULES_CLEAN=''
- +])
- +
- +AC_DEFUN([AX_CODE_COVERAGE],[
- + dnl Check for --enable-code-coverage
- +
- + # allow to override gcov location
- + AC_ARG_WITH([gcov],
- + [AS_HELP_STRING([--with-gcov[=GCOV]], [use given GCOV for coverage (GCOV=gcov).])],
- + [_AX_CODE_COVERAGE_GCOV_PROG_WITH=$with_gcov],
- + [_AX_CODE_COVERAGE_GCOV_PROG_WITH=gcov])
- +
- + AC_MSG_CHECKING([whether to build with code coverage support])
- + AC_ARG_ENABLE([code-coverage],
- + AS_HELP_STRING([--enable-code-coverage],
- + [Whether to enable code coverage support]),,
- + enable_code_coverage=no)
- +
- + AM_CONDITIONAL([CODE_COVERAGE_ENABLED], [test "x$enable_code_coverage" = xyes])
- + AC_SUBST([CODE_COVERAGE_ENABLED], [$enable_code_coverage])
- + AC_MSG_RESULT($enable_code_coverage)
- +
- + AS_IF([ test "x$enable_code_coverage" = xyes ], [
- + _AX_CODE_COVERAGE_ENABLED
- + ], [
- + _AX_CODE_COVERAGE_DISABLED
- + ])
- +
- +[CODE_COVERAGE_RULES='
- +# Code coverage
- +#
- +# Optional:
- +# - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting.
- +# Multiple directories may be specified, separated by whitespace.
- +# (Default: $(top_builddir))
- +# - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated
- +# by lcov for code coverage. (Default:
- +# $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage.info)
- +# - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage
- +# reports to be created. (Default:
- +# $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage)
- +# - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage,
- +# set to 0 to disable it and leave empty to stay with the default.
- +# (Default: empty)
- +# - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov
- +# instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE)
- +# - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov
- +# instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT)
- +# - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov
- +# - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the
- +# collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH)
- +# - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov
- +# instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT)
- +# - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering
- +# lcov instance. (Default: empty)
- +# - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov
- +# instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT)
- +# - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the
- +# genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE)
- +# - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml
- +# instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT)
- +# - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore
- +#
- +# The generated report will be titled using the $(PACKAGE_NAME) and
- +# $(PACKAGE_VERSION). In order to add the current git hash to the title,
- +# use the git-version-gen script, available online.
- +
- +# Optional variables
- +CODE_COVERAGE_DIRECTORY ?= $(top_builddir)
- +CODE_COVERAGE_OUTPUT_FILE ?= $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage.info
- +CODE_COVERAGE_OUTPUT_DIRECTORY ?= $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage
- +CODE_COVERAGE_BRANCH_COVERAGE ?=
- +CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\
- +--rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE))
- +CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT)
- +CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)"
- +CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH)
- +CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT)
- +CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?=
- +CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT)
- +CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\
- +$(if $(CODE_COVERAGE_BRANCH_COVERAGE),\
- +--rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE))
- +CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT)
- +CODE_COVERAGE_IGNORE_PATTERN ?=
- +
- +GITIGNOREFILES ?=
- +GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY)
- +
- +code_coverage_v_lcov_cap = $(code_coverage_v_lcov_cap_$(V))
- +code_coverage_v_lcov_cap_ = $(code_coverage_v_lcov_cap_$(AM_DEFAULT_VERBOSITY))
- +code_coverage_v_lcov_cap_0 = @echo " LCOV --capture"\
- + $(CODE_COVERAGE_OUTPUT_FILE);
- +code_coverage_v_lcov_ign = $(code_coverage_v_lcov_ign_$(V))
- +code_coverage_v_lcov_ign_ = $(code_coverage_v_lcov_ign_$(AM_DEFAULT_VERBOSITY))
- +code_coverage_v_lcov_ign_0 = @echo " LCOV --remove /tmp/*"\
- + $(CODE_COVERAGE_IGNORE_PATTERN);
- +code_coverage_v_genhtml = $(code_coverage_v_genhtml_$(V))
- +code_coverage_v_genhtml_ = $(code_coverage_v_genhtml_$(AM_DEFAULT_VERBOSITY))
- +code_coverage_v_genhtml_0 = @echo " GEN " $(CODE_COVERAGE_OUTPUT_DIRECTORY);
- +code_coverage_quiet = $(code_coverage_quiet_$(V))
- +code_coverage_quiet_ = $(code_coverage_quiet_$(AM_DEFAULT_VERBOSITY))
- +code_coverage_quiet_0 = --quiet
- +
- +# sanitizes the test-name: replaces with underscores: dashes and dots
- +code_coverage_sanitize = $(subst -,_,$(subst .,_,$(1)))
- +
- +# Use recursive makes in order to ignore errors during check
- +check-code-coverage:'"$CODE_COVERAGE_RULES_CHECK"'
- +
- +# Capture code coverage data
- +code-coverage-capture: code-coverage-capture-hook'"$CODE_COVERAGE_RULES_CAPTURE"'
- +
- +# Hook rule executed before code-coverage-capture, overridable by the user
- +code-coverage-capture-hook:
- +
- +'"$CODE_COVERAGE_RULES_CLEAN"'
- +
- +A''M_DISTCHECK_CONFIGURE_FLAGS ?=
- +A''M_DISTCHECK_CONFIGURE_FLAGS += --disable-code-coverage
- +
- +.PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean
- +']
- +
- + AC_SUBST([CODE_COVERAGE_RULES])
- + m4_ifdef([_AM_SUBST_NOTMAKE], [_AM_SUBST_NOTMAKE([CODE_COVERAGE_RULES])])
- +])
- diff --git a/m4/ax_lapack.m4 b/m4/ax_lapack.m4
- new file mode 100644
- --- /dev/null
- +++ b/m4/ax_lapack.m4
- @@ -0,0 +1,134 @@
- +# ===========================================================================
- +# https://www.gnu.org/software/autoconf-archive/ax_lapack.html
- +# ===========================================================================
- +#
- +# SYNOPSIS
- +#
- +# AX_LAPACK([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
- +#
- +# DESCRIPTION
- +#
- +# This macro looks for a library that implements the LAPACK linear-algebra
- +# interface (see http://www.netlib.org/lapack/). On success, it sets the
- +# LAPACK_LIBS output variable to hold the requisite library linkages.
- +#
- +# To link with LAPACK, you should link with:
- +#
- +# $LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS
- +#
- +# in that order. BLAS_LIBS is the output variable of the AX_BLAS macro,
- +# called automatically. FLIBS is the output variable of the
- +# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
- +# sometimes necessary in order to link with F77 libraries. Users will also
- +# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
- +# reason.
- +#
- +# The user may also use --with-lapack=<lib> in order to use some specific
- +# LAPACK library <lib>. In order to link successfully, however, be aware
- +# that you will probably need to use the same Fortran compiler (which can
- +# be set via the F77 env. var.) as was used to compile the LAPACK and BLAS
- +# libraries.
- +#
- +# ACTION-IF-FOUND is a list of shell commands to run if a LAPACK library
- +# is found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it
- +# is not found. If ACTION-IF-FOUND is not specified, the default action
- +# will define HAVE_LAPACK.
- +#
- +# LICENSE
- +#
- +# Copyright (c) 2009 Steven G. Johnson <stevenj@alum.mit.edu>
- +# Copyright (c) 2019 Geoffrey M. Oxberry <goxberry@gmail.com>
- +#
- +# This program is free software: you can redistribute it and/or modify it
- +# under the terms of the GNU General Public License as published by the
- +# Free Software Foundation, either version 3 of the License, or (at your
- +# option) any later version.
- +#
- +# This program is distributed in the hope that it will be useful, but
- +# WITHOUT ANY WARRANTY; without even the implied warranty of
- +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
- +# Public License for more details.
- +#
- +# You should have received a copy of the GNU General Public License along
- +# with this program. If not, see <https://www.gnu.org/licenses/>.
- +#
- +# As a special exception, the respective Autoconf Macro's copyright owner
- +# gives unlimited permission to copy, distribute and modify the configure
- +# scripts that are the output of Autoconf when processing the Macro. You
- +# need not follow the terms of the GNU General Public License when using
- +# or distributing such scripts, even though portions of the text of the
- +# Macro appear in them. The GNU General Public License (GPL) does govern
- +# all other use of the material that constitutes the Autoconf Macro.
- +#
- +# This special exception to the GPL applies to versions of the Autoconf
- +# Macro released by the Autoconf Archive. When you make and distribute a
- +# modified version of the Autoconf Macro, you may extend this special
- +# exception to the GPL to apply to your modified version as well.
- +
- +#serial 10
- +
- +AU_ALIAS([ACX_LAPACK], [AX_LAPACK])
- +AC_DEFUN([AX_LAPACK], [
- +AC_REQUIRE([AX_BLAS])
- +ax_lapack_ok=no
- +
- +AC_ARG_WITH(lapack,
- + [AS_HELP_STRING([--with-lapack=<lib>], [use LAPACK library <lib>])])
- +case $with_lapack in
- + yes | "") ;;
- + no) ax_lapack_ok=disable ;;
- + -* | */* | *.a | *.so | *.so.* | *.dylib | *.dylib.* | *.o)
- + LAPACK_LIBS="$with_lapack"
- + ;;
- + *) LAPACK_LIBS="-l$with_lapack" ;;
- +esac
- +
- +# Get fortran linker name of LAPACK function to check for.
- +AC_F77_FUNC(cheev)
- +
- +# We cannot use LAPACK if BLAS is not found
- +if test "x$ax_blas_ok" != xyes; then
- + ax_lapack_ok=noblas
- + LAPACK_LIBS=""
- +fi
- +
- +# First, check LAPACK_LIBS environment variable
- +if test "x$LAPACK_LIBS" != x; then
- + save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS"
- + AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS])
- + AC_LINK_IFELSE([AC_LANG_CALL([], [$cheev])], [ax_lapack_ok=yes], [LAPACK_LIBS=""])
- + AC_MSG_RESULT($ax_lapack_ok)
- + LIBS="$save_LIBS"
- + if test $ax_lapack_ok = no; then
- + LAPACK_LIBS=""
- + fi
- +fi
- +
- +# LAPACK linked to by default? (is sometimes included in BLAS lib)
- +if test $ax_lapack_ok = no; then
- + save_LIBS="$LIBS"; LIBS="$LIBS $BLAS_LIBS $FLIBS"
- + AC_CHECK_FUNC($cheev, [ax_lapack_ok=yes])
- + LIBS="$save_LIBS"
- +fi
- +
- +# Generic LAPACK library?
- +for lapack in lapack lapack_rs6k; do
- + if test $ax_lapack_ok = no; then
- + save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
- + AC_CHECK_LIB($lapack, $cheev,
- + [ax_lapack_ok=yes; LAPACK_LIBS="-l$lapack"], [], [$FLIBS])
- + LIBS="$save_LIBS"
- + fi
- +done
- +
- +AC_SUBST(LAPACK_LIBS)
- +
- +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
- +if test x"$ax_lapack_ok" = xyes; then
- + ifelse([$1],,AC_DEFINE(HAVE_LAPACK,1,[Define if you have LAPACK library.]),[$1])
- + :
- +else
- + ax_lapack_ok=no
- + $2
- +fi
- +])dnl AX_LAPACK
- diff --git a/spqr.pc.in b/spqr.pc.in
- new file mode 100644
- --- /dev/null
- +++ b/spqr.pc.in
- @@ -0,0 +1,13 @@
- +prefix=@prefix@
- +exec_prefix=@exec_prefix@
- +libdir=@libdir@
- +includedir=@includedir@
- +
- +Name: @PACKAGE_NAME@
- +Description: Multifrontal sparse QR factorization
- +Version: @PACKAGE_VERSION@
- +URL: @PACKAGE_URL@
- +Requires.private: cholmod suitesparseconfig
- +Libs: -L${libdir} -lspqr
- +Libs.private: @TBB_LIBS@ @LAPACK_LIBS@ @BLAS_LIBS@ -lm
- +Cflags: -I${includedir}/spqr
|