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- Clustal is a widely used, multiple sequence alignment program. This
- is Clustal Omega, the latest addition to the Clustal family. It
- offers a significant increase in scalability over previous versions,
- allowing hundreds of thousands of sequences to be aligned in only a
- few hours. In addition, the quality of alignments is superior to
- previous versions, as measured by a range of popular benchmarks.
- Clustal Omega is currently a command line-only tool, but the following
- independent programs provide an easy to use GUI:
- - seaview
- - ugene
- If you like Clustal-Omega please cite:
- Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R,
- McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG.
- Fast, scalable generation of high-quality protein multiple sequence
- alignments using Clustal Omega. Mol Syst Biol. 2011 Oct 11;7:539. doi:
- 10.1038/msb.2011.75. PMID: 21988835.
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