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B. Watson
0dabe9095b
academic/cap3: Fix docs.
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2 tahun lalu | |
|---|---|---|
| .. | ||
| LICENSE | 1aa1d7bb19 academic/cap3: Added (DNA sequence assembly program). | 11 tahun lalu |
| README | a02964b7f2 academic/cap3: Note the need to download the tarballs manually. | 2 tahun lalu |
| References | 1aa1d7bb19 academic/cap3: Added (DNA sequence assembly program). | 11 tahun lalu |
| cap3.SlackBuild | 0dabe9095b academic/cap3: Fix docs. | 2 tahun lalu |
| cap3.info | 964371efb1 academic/cap3: Fix 32-bit build when ARCH set in environment. | 2 tahun lalu |
| slack-desc | ec514e32c4 Multiple: update email, year and slack-desc | 8 tahun lalu |
README
CAP3: A DNA sequence assembly program.
CAP3 if the third generation of the CAP sequence assembly program. The
program has a capability to clip 5' and 3' low-quality regions
of reads. It uses base quality values in computation of overlaps
between reads, construction of multiple sequence alignments of
reads, and generation of consensus sequences. The program also uses
forward-reverse constraints to correct assembly errors and link
contigs.
This just repackages the binaries provided from upstream.
If you use CAP3 in any published work, please cite:
Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program.
Genome Res., 9, 868-877.
*NOTE* you have to download the tarballs manually from a browser,
to read and accept the license.
CAP3 if the third generation of the CAP sequence assembly program. The
program has a capability to clip 5' and 3' low-quality regions
of reads. It uses base quality values in computation of overlaps
between reads, construction of multiple sequence alignments of
reads, and generation of consensus sequences. The program also uses
forward-reverse constraints to correct assembly errors and link
contigs.
This just repackages the binaries provided from upstream.
If you use CAP3 in any published work, please cite:
Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program.
Genome Res., 9, 868-877.
*NOTE* you have to download the tarballs manually from a browser,
to read and accept the license.