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- The Biopython Project is an international association of developers of
- freely available Python tools for computational molecular biology.
- The Biopython web site provides an online resource for modules,
- scripts, and web links for developers of Python-based software for
- bioinformatics use and research. Basically, the goal of Biopython is
- to make it as easy as possible to use Python for bioinformatics by
- creating high-quality, reusable modules and classes. Biopython
- features include parsers for various Bioinformatics file formats
- (BLAST, Clustalw, FASTA, Genbank,...), access to online services
- (NCBI, Expasy,...), interfaces to common and not-so-common programs
- (Clustalw, DSSP, MSMS,...), a standard sequence class, various
- clustering modules, a KD tree data structure etc. and even
- documentation.
- If you use Biopython in work contributing to a scientific publication,
- please cite the application note (below) or one of the module specific
- publications (listed on Biopython's website):
- Cock, P.J.A. et al. Biopython: freely available Python tools for
- computational molecular biology and bioinformatics. Bioinformatics
- 2009 Jun 1; 25(11) 1422-3
- http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878
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