README 1.2 KB

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  1. The Biopython Project is an international association of developers of
  2. freely available Python tools for computational molecular biology.
  3. The Biopython web site provides an online resource for modules,
  4. scripts, and web links for developers of Python-based software for
  5. bioinformatics use and research. Basically, the goal of Biopython is
  6. to make it as easy as possible to use Python for bioinformatics by
  7. creating high-quality, reusable modules and classes. Biopython
  8. features include parsers for various Bioinformatics file formats
  9. (BLAST, Clustalw, FASTA, Genbank,...), access to online services
  10. (NCBI, Expasy,...), interfaces to common and not-so-common programs
  11. (Clustalw, DSSP, MSMS,...), a standard sequence class, various
  12. clustering modules, a KD tree data structure etc. and even
  13. documentation.
  14. If you use Biopython in work contributing to a scientific publication,
  15. please cite the application note (below) or one of the module specific
  16. publications (listed on Biopython's website):
  17. Cock, P.J.A. et al. Biopython: freely available Python tools for
  18. computational molecular biology and bioinformatics. Bioinformatics
  19. 2009 Jun 1; 25(11) 1422-3
  20. http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878