Struktur:
67dec11b58
11.0
12.0
12.1
12.2
13.0
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13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
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python-renames
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urchlay
user/aclemons/updates
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user/anddt/development/glm
user/anddt/development/gnustep-base
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user/anddt/misc/discount
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user/anddt/network/putty
user/anddt/network/rclone
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user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
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user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
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Petar Petrov
c7b5f68ad5
academic/staden: Fix build against tklib 0.6.
|
vor 9 Jahren | |
|---|---|---|
| .. | ||
| desktop | fe3095faf8 academic/staden: Several fixes/enhancements | vor 12 Jahren |
| README | 9d8a8a88ef academic/staden: Updated for version 2.0.0b10. | vor 10 Jahren |
| References | 7bf998ee43 academic/staden: Added (DNA sequence assembly, editing, and analysis tools) | vor 12 Jahren |
| doinst.sh | 7bf998ee43 academic/staden: Added (DNA sequence assembly, editing, and analysis tools) | vor 12 Jahren |
| slack-desc | 610e8461bb various: Fix slack-desc formatting and comment nit picks. | vor 11 Jahren |
| staden.SlackBuild | c7b5f68ad5 academic/staden: Fix build against tklib 0.6. | vor 9 Jahren |
| staden.info | 9d8a8a88ef academic/staden: Updated for version 2.0.0b10. | vor 10 Jahren |
README
The programs part of the Staden package provide an excellent and fully
developed set of DNA sequence assembly, editing, analysis and more.
Some of its features include:
GAP4 - Performs assembly, contig joining, assembly checking, repeat
search, experiment suggestion, read pair analysis and contig
editing.
GAP5 - The new development version of Gap4, designed to work with the
large volumes of data attainable through the newer sequencing
technologies.
PREGAP4 - Provides a graphical user interface to set up the processing
required to prepare trace data for assembly or analysis.
SPIN - Compares pairs of sequences in many ways, often presenting its
results graphically and has a sliding sequence window linked to
the plots.
TREV - A rapid and flexible viewer and editor for ABI, ALF or SCF
trace files.
For more information and citing, visit Staden's web page and check the
"References" file in the documentation.
developed set of DNA sequence assembly, editing, analysis and more.
Some of its features include:
GAP4 - Performs assembly, contig joining, assembly checking, repeat
search, experiment suggestion, read pair analysis and contig
editing.
GAP5 - The new development version of Gap4, designed to work with the
large volumes of data attainable through the newer sequencing
technologies.
PREGAP4 - Provides a graphical user interface to set up the processing
required to prepare trace data for assembly or analysis.
SPIN - Compares pairs of sequences in many ways, often presenting its
results graphically and has a sliding sequence window linked to
the plots.
TREV - A rapid and flexible viewer and editor for ABI, ALF or SCF
trace files.
For more information and citing, visit Staden's web page and check the
"References" file in the documentation.