Дрво:
67dec11b58
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13.37
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15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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Petar Petrov
c58570189a
academic/seaview: Updated for version 4.5.4.
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пре 9 година | |
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| .. | ||
| README | 19d870803c academic/seaview: Updated for version 4.5.3.4. | пре 9 година |
| References | 988aacfea1 academic/seaview: Added (sequence alignment and phylogeny GUI) | пре 13 година |
| doinst.sh | 988aacfea1 academic/seaview: Added (sequence alignment and phylogeny GUI) | пре 13 година |
| seaview.SlackBuild | c58570189a academic/seaview: Updated for version 4.5.4. | пре 9 година |
| seaview.desktop | d74ce3a23f academic/seaview: Updated for version 4.3.2. | пре 12 година |
| seaview.info | c58570189a academic/seaview: Updated for version 4.5.4. | пре 9 година |
| slack-desc | c58570189a academic/seaview: Updated for version 4.5.4. | пре 9 година |
README
SeaView is a multiplatform, graphical user interface for multiple
sequence alignment and molecular phylogeny. Important features are:
1) SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL,
FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of
phylogenetic trees.
2) SeaView drives programs muscle or Clustal Omega (clustalo) for
multiple sequence alignment, and also allows to use any external
alignment algorithm able to read and write FASTA-formatted files.
3) Seaview drives the Gblocks program to select blocks of
evolutionarily conserved sites.
4) SeaView computes phylogenetic trees by
a) parsimony, using PHYLIP's dnapars/protpars algorithm
b) distance, with NJ or BioNJ algorithms on a variety of
evolutionary distances,
c) maximum likelihood, driving program PhyML 3.1.
5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or
PostScript files.
6) SeaView allows to download sequences from EMBL/GenBank/UniProt
using the Internet.
For details and citation:
Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a
multiplatform graphical user interface for sequence alignment and
phylogenetic tree building. Molecular Biology and Evolution
27(2):221-224.
sequence alignment and molecular phylogeny. Important features are:
1) SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL,
FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of
phylogenetic trees.
2) SeaView drives programs muscle or Clustal Omega (clustalo) for
multiple sequence alignment, and also allows to use any external
alignment algorithm able to read and write FASTA-formatted files.
3) Seaview drives the Gblocks program to select blocks of
evolutionarily conserved sites.
4) SeaView computes phylogenetic trees by
a) parsimony, using PHYLIP's dnapars/protpars algorithm
b) distance, with NJ or BioNJ algorithms on a variety of
evolutionary distances,
c) maximum likelihood, driving program PhyML 3.1.
5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or
PostScript files.
6) SeaView allows to download sequences from EMBL/GenBank/UniProt
using the Internet.
For details and citation:
Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a
multiplatform graphical user interface for sequence alignment and
phylogenetic tree building. Molecular Biology and Evolution
27(2):221-224.