Tree:
67dec11b58
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
15.0-20230325.1
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15.0-20230107.1
15.0-20221231.1
15.0-20221223.1
15.0-20221217.1
15.0-20221210.1
15.0-20221203.1
15.0-20221126.1
15.0-20221119.1
15.0-20221112.1
15.0-20221105.1
15.0-20221029.1
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15.0-20220604.1
15.0-20220528.1
15.0-20220521.1
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15.0-20220430.1
15.0-20220423.1
15.0-20220416.1
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14.2-20210417.1
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14.2-20201003.1
14.2-20200926.1
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14.2-20200912.1
14.2-20200905.1
14.2-20200829.1
14.2-20200628.1
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14.2-20200614.1
14.2-20200606.1
14.2-20200601.1
14.2-20200523.1
14.2-20200516.1
14.2-20200510.1
14.2-20200503.1
14.2-20200424.1
14.2-20200419.1
14.2-20200411.1
14.2-20200406.1
14.2-20200404.1
14.2-20200328.1
14.2-20200321.1
14.2-20200314.1
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14.2-20200223.1
14.2-20200215.1
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14.2-20200112.1
14.2-20200103.1
14.2-20191231.1
14.2-20191221.1
14.2-20191215.1
14.2-20191207.1
14.2-20191201.1
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14.2-20190427.1
14.2-20190420.1
14.2-20190413.1
14.2-20190406.1
14.2-20190330.1
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14.2-20190202.1
14.2-20190126.1
14.2-20190119.1
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14.2-20190105.1
14.2-20181229.1
14.2-20181225.1
14.2-20181222.1
14.2-20181215.1
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14.2-20181201.1
14.2-20181124.1
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14.2-20181103.1
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14.2-20181020.1
14.2-20181013.1
14.2-20181006.1
14.2-20180929.1
14.2-20180923.1
14.2-20180922.1
14.2-20180915.1
14.2-20180908.1
14.2-20180901.1
14.2-20180825.1
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14.2-20180811.1
14.2-20180804.1
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14.2-20180714.1
14.2-20180707.1
14.2-20180630.1
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14.2-20180614.1
14.2-20180609.1
14.2-20180602.1
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14.2-20180110.1
14.2-20180106.1
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Petar Petrov
ad31a4947a
academic/bowtie2: Added (A tool for aligning sequencing reads).
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11 years ago | |
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| README | ad31a4947a academic/bowtie2: Added (A tool for aligning sequencing reads). | 11 years ago |
| References | ad31a4947a academic/bowtie2: Added (A tool for aligning sequencing reads). | 11 years ago |
| bowtie2.SlackBuild | ad31a4947a academic/bowtie2: Added (A tool for aligning sequencing reads). | 11 years ago |
| bowtie2.info | ad31a4947a academic/bowtie2: Added (A tool for aligning sequencing reads). | 11 years ago |
| slack-desc | ad31a4947a academic/bowtie2: Added (A tool for aligning sequencing reads). | 11 years ago |
README
Bowtie 2 is an ultrafast and memory-efficient tool for aligning
sequencing reads to long reference sequences. It is particularly good
at aligning reads of about 50 up to 100s or 1,000s of characters, and
particularly good at aligning to relatively long (e.g. mammalian)
genomes. Bowtie 2 indexes the genome with an FM Index to keep its
memory footprint small: for the human genome, its memory footprint is
typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-
end alignment modes.
Please cite:
Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2.
Nature Methods. 2012, 9:357-359.
sequencing reads to long reference sequences. It is particularly good
at aligning reads of about 50 up to 100s or 1,000s of characters, and
particularly good at aligning to relatively long (e.g. mammalian)
genomes. Bowtie 2 indexes the genome with an FM Index to keep its
memory footprint small: for the human genome, its memory footprint is
typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-
end alignment modes.
Please cite:
Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2.
Nature Methods. 2012, 9:357-359.