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Petar Petrov
3f5f2cea71
academic/aline: Add option to change row length.
|
9 anni fa | |
|---|---|---|
| .. | ||
| README | 3f5f2cea71 academic/aline: Add option to change row length. | 9 anni fa |
| References | a536adc58e academic/aline: Added (Tk graphical interface for Perl) | 11 anni fa |
| aline.SlackBuild | 3f5f2cea71 academic/aline: Add option to change row length. | 9 anni fa |
| aline.desktop | a536adc58e academic/aline: Added (Tk graphical interface for Perl) | 11 anni fa |
| aline.info | 3f5f2cea71 academic/aline: Add option to change row length. | 9 anni fa |
| aline.png | a536adc58e academic/aline: Added (Tk graphical interface for Perl) | 11 anni fa |
| doinst.sh | a536adc58e academic/aline: Added (Tk graphical interface for Perl) | 11 anni fa |
| slack-desc | a536adc58e academic/aline: Added (Tk graphical interface for Perl) | 11 anni fa |
README
Aline: An Extensible WYSIWYG Protein Sequence Alignment Editor for
Publication Quality Figures.
Aline is an interactive perl/tk application which can read common
sequence alignment formats which the user can then alter, embellish,
markup etc to produce the kind of sequence figure commonly found in
biochemical articles.
NOTE
The default row length is 100 residues. If you want to change that to
something else (e.g. 1000) pass ROW=1000 to the script.
OPTIONAL
Although not needed for running Aline, clustalw and mkDSSP are
desirable for its complete functionality. A third tool is CHAINSAW,
part of the CCP4 suite (http://www.ccp4.ac.uk/). Visit the web site
for more information and installation instructions if you want it.
CITING
Bond, C.S. and Schüttelkopf, A.W. (2009), Acta cryst. D65, 510-512
Publication Quality Figures.
Aline is an interactive perl/tk application which can read common
sequence alignment formats which the user can then alter, embellish,
markup etc to produce the kind of sequence figure commonly found in
biochemical articles.
NOTE
The default row length is 100 residues. If you want to change that to
something else (e.g. 1000) pass ROW=1000 to the script.
OPTIONAL
Although not needed for running Aline, clustalw and mkDSSP are
desirable for its complete functionality. A third tool is CHAINSAW,
part of the CCP4 suite (http://www.ccp4.ac.uk/). Visit the web site
for more information and installation instructions if you want it.
CITING
Bond, C.S. and Schüttelkopf, A.W. (2009), Acta cryst. D65, 510-512