Tree:
3cf11b8ae0
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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Heinz Wiesinger
63daf9f79a
All: Support $PRINT_PACKAGE_NAME env var
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3 years ago | |
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| .. | ||
| README | 8d79c453ce academic/bwa: Updated for version 0.7.15. | 8 years ago |
| References | ab46533b59 academic/bwa: Added (Burrows-Wheeler Aligner). | 11 years ago |
| bwa.SlackBuild | 63daf9f79a All: Support $PRINT_PACKAGE_NAME env var | 3 years ago |
| bwa.info | 7abde72faf academic/bwa: Updated for version 0.7.17. | 6 years ago |
| slack-desc | 7abde72faf academic/bwa: Updated for version 0.7.17. | 6 years ago |
README
Burrows-Wheeler Aligner (BWA) is an efficient program that aligns
relatively short nucleotide sequences against a long reference sequence
such as the human genome. It implements two algorithms, bwa-short and
BWA-SW. The former works for query sequences shorter than 200bp and the
latter for longer sequences up to around 100kbp. Both algorithms do
gapped alignment. They are usually more accurate and faster on queries
with low error rates.
A configuration file ("_aptx_configuration_file") will be used if it is
in your $HOME. An example configuration file is available in
/usr/share/archeopteryx.
If you use BWA-SW, please cite:
Li H. and Durbin R. (2010) Fast and accurate long-read alignment with
Burrows-Wheeler Transform. Bioinformatics, Epub.
relatively short nucleotide sequences against a long reference sequence
such as the human genome. It implements two algorithms, bwa-short and
BWA-SW. The former works for query sequences shorter than 200bp and the
latter for longer sequences up to around 100kbp. Both algorithms do
gapped alignment. They are usually more accurate and faster on queries
with low error rates.
A configuration file ("_aptx_configuration_file") will be used if it is
in your $HOME. An example configuration file is available in
/usr/share/archeopteryx.
If you use BWA-SW, please cite:
Li H. and Durbin R. (2010) Fast and accurate long-read alignment with
Burrows-Wheeler Transform. Bioinformatics, Epub.