Strom:
331a473f1a
11.0
12.0
12.1
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13.0
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14.0
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bedlam
bedlam-name-fixes
dive
erik
gitignore
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python-renames
rworkman
urchlay
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user/anddt/development/glm
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user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
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user/chris.willing/updates
user/dslackw/updates
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user/kingbeowulf/updates
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user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
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Dave Woodfall
f67f30e039
academic/tophat: Use -std=c++14.
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| README | a2cdd781cc academic/tophat: Updated for version 2.0.13. | před 9 roky |
| References | d9759a11f4 academic/tophat: Added (Splice junction mapper for RNA-Seq reads). | před 11 roky |
| make_pair.patch | c920f65d43 academic/tophat: Patched for gcc >= 6.x. | před 3 roky |
| slack-desc | 45e3e0299e academic/tophat: Updated for version 2.1.2. | před 5 roky |
| tophat.SlackBuild | f67f30e039 academic/tophat: Use -std=c++14. | před 2 roky |
| tophat.info | 45e3e0299e academic/tophat: Updated for version 2.1.2. | před 5 roky |
README
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput
short read aligner Bowtie, and then analyzes the mapping results to
identify splice junctions between exons.
TopHat is a collaborative effort between the Institute of Genetic
Medicine at Johns Hopkins University, the Departments of Mathematics
and Molecular and Cell Biology at the University of California,
Berkeley and the Department of Stem Cell and Regenerative Biology at
Harvard University.
A recommended dependency is bowtie2.
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput
short read aligner Bowtie, and then analyzes the mapping results to
identify splice junctions between exons.
TopHat is a collaborative effort between the Institute of Genetic
Medicine at Johns Hopkins University, the Departments of Mathematics
and Molecular and Cell Biology at the University of California,
Berkeley and the Department of Stem Cell and Regenerative Biology at
Harvard University.
A recommended dependency is bowtie2.