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brobr
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academic/bowtie2: ugraded to version 2.5.0
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| README | ad31a4947a academic/bowtie2: Added (A tool for aligning sequencing reads). | 11 gadi atpakaļ |
| bowtie2.SlackBuild | 5243543eb4 academic/bowtie2: ugraded to version 2.5.0 | 1 gadu atpakaļ |
| bowtie2.info | 5243543eb4 academic/bowtie2: ugraded to version 2.5.0 | 1 gadu atpakaļ |
| slack-desc | 5a353968a9 academic/bowtie2: Updated for version 2.3.4.3 + new maintainer. | 5 gadi atpakaļ |
README
Bowtie 2 is an ultrafast and memory-efficient tool for aligning
sequencing reads to long reference sequences. It is particularly good
at aligning reads of about 50 up to 100s or 1,000s of characters, and
particularly good at aligning to relatively long (e.g. mammalian)
genomes. Bowtie 2 indexes the genome with an FM Index to keep its
memory footprint small: for the human genome, its memory footprint is
typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-
end alignment modes.
Please cite:
Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2.
Nature Methods. 2012, 9:357-359.
sequencing reads to long reference sequences. It is particularly good
at aligning reads of about 50 up to 100s or 1,000s of characters, and
particularly good at aligning to relatively long (e.g. mammalian)
genomes. Bowtie 2 indexes the genome with an FM Index to keep its
memory footprint small: for the human genome, its memory footprint is
typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-
end alignment modes.
Please cite:
Langmead B, Salzberg S. Fast gapped-read alignment with Bowtie 2.
Nature Methods. 2012, 9:357-359.