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meme-db-motif
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README

README 1.0 KB
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  1. Motif Databases (updated 28 Oct 2019) to be used with MEME Suite:
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  2. 

  3. Eukaryote DNA (13 Databases)
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  4. Prokaryote DNA (4 Databases)
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  5. Methylcytosine DNA (1 Databases)
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  6. JASPAR (NON-REDUNDANT) DNA (21 Databases)
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  7. JASPAR (REDUNDANT) DNA (21 Databases)
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  8. JASPAR COLLECTIONS DNA (5 Databases)
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  9. TFBSshape DNA (3 Databases)
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  10. CIS-BP Single Species DNA (321 Databases)
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  11. ARABIDOPSIS (Arabidopsis thaliana) DNA (2 Databases)
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  12. ECOLI (Escherichia coli) DNA (2 Databases)
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  13. FLY (Drosophila melanogaster) DNA (6 Databases)
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  14. HUMAN (Homo sapiens) DNA (4 Databases)
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  15. MALARIA (Plasmodia falciparum) DNA (1 Databases)
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  16. MOUSE (Mus musculus) DNA (5 Databases)
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  17. WORM (Caenorhabditis elegans) DNA (1 Databases)
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  18. YEAST (Saccharomyces_cerevisiae) DNA (6 Databases)
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  19. CISBP-RNA Single Species RNA (268 Databases)
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  20. CISBP-RNA Single Species RNA (DNA-encoded) (268 Databases)
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  21. RNA (25 Databases)
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  22. RNA (DNA-encoded) (25 Databases)
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  23. miRBase Single Species microRNA (223 Databases)
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  24. miRBase Single Species microRNA (DNA-encoded) (223 Databases)
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  25. Protein Motifs (2 Databases)
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  27. Note!
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  28. The unarchived size of this is ~140 MB
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