Branch:
14.1
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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Petar Petrov
c61d2947f7
academic/tophat: Updated for version 2.1.0.
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8 years ago | |
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| README | a2cdd781cc academic/tophat: Updated for version 2.0.13. | 9 years ago |
| References | d9759a11f4 academic/tophat: Added (Splice junction mapper for RNA-Seq reads). | 10 years ago |
| slack-desc | c61d2947f7 academic/tophat: Updated for version 2.1.0. | 8 years ago |
| tophat.SlackBuild | c61d2947f7 academic/tophat: Updated for version 2.1.0. | 8 years ago |
| tophat.info | c61d2947f7 academic/tophat: Updated for version 2.1.0. | 8 years ago |
README
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput
short read aligner Bowtie, and then analyzes the mapping results to
identify splice junctions between exons.
TopHat is a collaborative effort between the Institute of Genetic
Medicine at Johns Hopkins University, the Departments of Mathematics
and Molecular and Cell Biology at the University of California,
Berkeley and the Department of Stem Cell and Regenerative Biology at
Harvard University.
A recommended dependency is bowtie2.
RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput
short read aligner Bowtie, and then analyzes the mapping results to
identify splice junctions between exons.
TopHat is a collaborative effort between the Institute of Genetic
Medicine at Johns Hopkins University, the Departments of Mathematics
and Molecular and Cell Biology at the University of California,
Berkeley and the Department of Stem Cell and Regenerative Biology at
Harvard University.
A recommended dependency is bowtie2.