Branch:
14.1
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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Petar Petrov
00017f6260
academic/samtools: Added (Sequence Alignment/Map Tools).
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10 years ago | |
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| README | 00017f6260 academic/samtools: Added (Sequence Alignment/Map Tools). | 10 years ago |
| References | 00017f6260 academic/samtools: Added (Sequence Alignment/Map Tools). | 10 years ago |
| samtools.SlackBuild | 00017f6260 academic/samtools: Added (Sequence Alignment/Map Tools). | 10 years ago |
| samtools.info | 00017f6260 academic/samtools: Added (Sequence Alignment/Map Tools). | 10 years ago |
| slack-desc | 00017f6260 academic/samtools: Added (Sequence Alignment/Map Tools). | 10 years ago |
README
SAM (Sequence Alignment/Map) format is a generic format for storing
large nucleotide sequence alignments. SAM aims to be a format that:
- Is flexible enough to store all the alignment information generated
by various alignment programs
- Is simple enough to be easily generated by alignment programs or
converted from existing alignment formats
- Is compact in file size
- Allows most of operations on the alignment to work on a stream
without loading the whole alignment into memory
- Allows the file to be indexed by genomic position to efficiently
retrieve all reads aligning to a locus.
SAM Tools provide various utilities for manipulating alignments in the
SAM format, including sorting, merging, indexing and generating
alignments in a per-position format.
Publication:
Li H.*, Handsaker B.*, Wysoker A., Fennell T., Ruan J., Homer N.,
Marth G., Abecasis G., Durbin R. and 1000 Genome Project Data
Processing Subgroup (2009) The Sequence alignment/map (SAM) format and
SAMtools. Bioinformatics, 25, 2078-9. [PMID: 19505943]
large nucleotide sequence alignments. SAM aims to be a format that:
- Is flexible enough to store all the alignment information generated
by various alignment programs
- Is simple enough to be easily generated by alignment programs or
converted from existing alignment formats
- Is compact in file size
- Allows most of operations on the alignment to work on a stream
without loading the whole alignment into memory
- Allows the file to be indexed by genomic position to efficiently
retrieve all reads aligning to a locus.
SAM Tools provide various utilities for manipulating alignments in the
SAM format, including sorting, merging, indexing and generating
alignments in a per-position format.
Publication:
Li H.*, Handsaker B.*, Wysoker A., Fennell T., Ruan J., Homer N.,
Marth G., Abecasis G., Durbin R. and 1000 Genome Project Data
Processing Subgroup (2009) The Sequence alignment/map (SAM) format and
SAMtools. Bioinformatics, 25, 2078-9. [PMID: 19505943]