Branch:
14.1
11.0
12.0
12.1
12.2
13.0
13.1
13.37
14.0
14.1
14.2
15.0
bedlam
bedlam-name-fixes
dive
erik
gitignore
libressl-gopher-test
master
misc-fixes
python-renames
rworkman
urchlay
user/aclemons/updates
user/anddt/development/acpica
user/anddt/development/glm
user/anddt/development/gnustep-base
user/anddt/development/gnustep-make
user/anddt/games/assaultcube-reloaded
user/anddt/games/doomseeker
user/anddt/games/prboom-plus
user/anddt/games/rocksndiamonds
user/anddt/games/rottexpr
user/anddt/games/srb2
user/anddt/graphics/blender
user/anddt/graphics/maim
user/anddt/ham/chirp
user/anddt/ham/hamlib
user/anddt/libraries/girara
user/anddt/libraries/goffice
user/anddt/libraries/gtksourceview4
user/anddt/libraries/imlib2
user/anddt/libraries/jsoncpp
user/anddt/libraries/libnova
user/anddt/libraries/libopenmpt
user/anddt/libraries/libtorrent
user/anddt/libraries/wxGTK3
user/anddt/libraries/xmlrpc-c
user/anddt/misc/discount
user/anddt/misc/slop
user/anddt/network/nethogs
user/anddt/network/putty
user/anddt/network/rclone
user/anddt/network/rtorrent
user/anddt/network/sshguard
user/anddt/network/strongswan
user/anddt/network/umurmur
user/anddt/network/yt-dlp
user/anddt/network/znc
user/anddt/office/gnumeric
user/anddt/office/sigil
user/anddt/system/FontAwesome
user/anddt/system/conky
user/anddt/system/fakeroot
user/anddt/system/hplip-plugin
user/anddt/system/postgresql
user/anddt/system/testdisk
user/anddt/system/worker
user/anddt/system/xen
user/anddt/system/zzzfm
user/belka/updates
user/chris.willing/updates
user/dslackw/updates
user/elyk/updates
user/kingbeowulf/updates
user/mario/updates
user/ponce/updates
user/pprkut/updates
willysr
wxWidgets-wip
GPG-KEY
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various: Update find command to match template.
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10 years ago | |
|---|---|---|
| .. | ||
| LICENSE | 1aa1d7bb19 academic/cap3: Added (DNA sequence assembly program). | 11 years ago |
| README | 1aa1d7bb19 academic/cap3: Added (DNA sequence assembly program). | 11 years ago |
| References | 1aa1d7bb19 academic/cap3: Added (DNA sequence assembly program). | 11 years ago |
| cap3.SlackBuild | d0c108251a various: Update find command to match template. | 10 years ago |
| cap3.info | 1aa1d7bb19 academic/cap3: Added (DNA sequence assembly program). | 11 years ago |
| slack-desc | 1aa1d7bb19 academic/cap3: Added (DNA sequence assembly program). | 11 years ago |
README
CAP3: A DNA sequence assembly program.
CAP3 if the third generation of the CAP sequence assembly program. The
program has a capability to clip 5' and 3' low-quality regions of reads.
It uses base quality values in computation of overlaps between reads,
construction of multiple sequence alignments of reads, and generation
of consensus sequences. The program also uses forward-reverse constraints
to correct assembly errors and link contigs.
This just repackages the binaries provided from upstream.
If you use CAP3 in any published work, please cite:
Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program.
Genome Res., 9, 868-877.
CAP3 if the third generation of the CAP sequence assembly program. The
program has a capability to clip 5' and 3' low-quality regions of reads.
It uses base quality values in computation of overlaps between reads,
construction of multiple sequence alignments of reads, and generation
of consensus sequences. The program also uses forward-reverse constraints
to correct assembly errors and link contigs.
This just repackages the binaries provided from upstream.
If you use CAP3 in any published work, please cite:
Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program.
Genome Res., 9, 868-877.