@comment $OpenBSD: PLIST,v 1.5 2015/03/16 18:07:37 naddy Exp $
@conflict aguri-*
@conflict pscan-*
@bin bin/aaindexextract
@bin bin/abiview
@bin bin/acdc
@bin bin/acdpretty
@bin bin/acdtable
@bin bin/acdtrace
@bin bin/acdvalid
@bin bin/aligncopy
@bin bin/aligncopypair
@bin bin/antigenic
@bin bin/backtranambig
@bin bin/backtranseq
@bin bin/banana
@bin bin/biosed
@bin bin/btwisted
@bin bin/cai
@bin bin/chaos
@bin bin/charge
@bin bin/checktrans
@bin bin/chips
@bin bin/cirdna
@bin bin/codcmp
@bin bin/codcopy
@bin bin/coderet
@bin bin/compseq
@bin bin/cons
@bin bin/consambig
@bin bin/cpgplot
@bin bin/cpgreport
@bin bin/cusp
@bin bin/cutgextract
@bin bin/cutseq
@bin bin/dan
@bin bin/dbiblast
@bin bin/dbifasta
@bin bin/dbiflat
@bin bin/dbigcg
@bin bin/dbxfasta
@bin bin/dbxflat
@bin bin/dbxgcg
@bin bin/degapseq
@bin bin/density
@bin bin/descseq
@bin bin/diffseq
@bin bin/digest
@bin bin/distmat
@bin bin/dotmatcher
@bin bin/dotpath
@bin bin/dottup
@bin bin/dreg
@bin bin/edialign
@bin bin/einverted
@bin bin/embossdata
@bin bin/embossversion
@bin bin/emma
@bin bin/emowse
@bin bin/entret
@bin bin/epestfind
@bin bin/eprimer3
@bin bin/equicktandem
@bin bin/est2genome
@bin bin/etandem
@bin bin/extractalign
@bin bin/extractfeat
@bin bin/extractseq
@bin bin/featcopy
@bin bin/featreport
@bin bin/findkm
@bin bin/freak
@bin bin/fuzznuc
@bin bin/fuzzpro
@bin bin/fuzztran
@bin bin/garnier
@bin bin/geecee
@bin bin/getorf
@bin bin/helixturnhelix
@bin bin/hmoment
@bin bin/iep
@bin bin/infoalign
@bin bin/infobase
@bin bin/inforesidue
@bin bin/infoseq
@bin bin/isochore
@bin bin/jaspextract
@bin bin/jaspscan
@bin bin/jembossctl
@bin bin/lindna
@bin bin/listor
@bin bin/makenucseq
@bin bin/makeprotseq
@bin bin/marscan
@bin bin/maskambignuc
@bin bin/maskambigprot
@bin bin/maskfeat
@bin bin/maskseq
@bin bin/matcher
@bin bin/megamerger
@bin bin/merger
@bin bin/msbar
@bin bin/mwcontam
@bin bin/mwfilter
@bin bin/needle
@bin bin/newcpgreport
@bin bin/newcpgseek
@bin bin/newseq
@bin bin/nohtml
@bin bin/noreturn
@bin bin/nospace
@bin bin/notab
@bin bin/notseq
@bin bin/nthseq
@bin bin/octanol
@bin bin/oddcomp
@bin bin/palindrome
@bin bin/pasteseq
@bin bin/patmatdb
@bin bin/patmatmotifs
@bin bin/pepcoil
@bin bin/pepinfo
@bin bin/pepnet
@bin bin/pepstats
@bin bin/pepwheel
@bin bin/pepwindow
@bin bin/pepwindowall
@bin bin/plotcon
@bin bin/plotorf
@bin bin/polydot
@bin bin/preg
@bin bin/prettyplot
@bin bin/prettyseq
@bin bin/primersearch
@bin bin/printsextract
@bin bin/profit
@bin bin/prophecy
@bin bin/prophet
@bin bin/prosextract
@bin bin/pscan
@bin bin/psiphi
@bin bin/rebaseextract
@bin bin/recoder
@bin bin/redata
@bin bin/remap
@bin bin/restover
@bin bin/restrict
@bin bin/revseq
bin/runJemboss.csh
@bin bin/seealso
@bin bin/seqmatchall
@bin bin/seqret
@bin bin/seqretsplit
@bin bin/showalign
@bin bin/showdb
@bin bin/showfeat
@bin bin/showorf
@bin bin/showseq
@bin bin/shuffleseq
@bin bin/sigcleave
@bin bin/silent
@bin bin/sirna
@bin bin/sixpack
@bin bin/sizeseq
@bin bin/skipredundant
@bin bin/skipseq
@bin bin/splitter
@bin bin/stretcher
@bin bin/stssearch
@bin bin/supermatcher
@bin bin/syco
@bin bin/tcode
@bin bin/textsearch
@bin bin/tfextract
@bin bin/tfm
@bin bin/tfscan
@bin bin/tmap
@bin bin/tranalign
@bin bin/transeq
@bin bin/trimest
@bin bin/trimseq
@bin bin/trimspace
@bin bin/twofeat
@bin bin/union
@bin bin/vectorstrip
@bin bin/water
@bin bin/whichdb
@bin bin/wobble
@bin bin/wordcount
@bin bin/wordfinder
@bin bin/wordmatch
@bin bin/wossname
@bin bin/yank
include/ajacd.h
include/ajalign.h
include/ajarch.h
include/ajarr.h
include/ajassert.h
include/ajax.h
include/ajbase.h
include/ajcall.h
include/ajcod.h
include/ajdan.h
include/ajdefine.h
include/ajdmx.h
include/ajdom.h
include/ajdomain.h
include/ajexcept.h
include/ajfeat.h
include/ajfeatdata.h
include/ajfile.h
include/ajfiledata.h
include/ajfileio.h
include/ajfmt.h
include/ajgraph.h
include/ajgraphstruct.h
include/ajgraphxml.h
include/ajhist.h
include/ajindex.h
include/ajjava.h
include/ajlist.h
include/ajmath.h
include/ajmatrices.h
include/ajmem.h
include/ajmess.h
include/ajnam.h
include/ajnexus.h
include/ajpat.h
include/ajpdb.h
include/ajpdbio.h
include/ajphylo.h
include/ajrange.h
include/ajreg.h
include/ajreport.h
include/ajseq.h
include/ajseqabi.h
include/ajseqdata.h
include/ajseqdb.h
include/ajseqread.h
include/ajseqtype.h
include/ajseqwrite.h
include/ajsort.h
include/ajstr.h
include/ajsys.h
include/ajtable.h
include/ajtime.h
include/ajtranslate.h
include/ajtree.h
include/ajutil.h
include/ajvector.h
include/embaln.h
include/embcom.h
include/embcons.h
include/embdata.h
include/embdbi.h
include/embdmx.h
include/embdomain.h
include/embest.h
include/embexit.h
include/embgroup.h
include/embiep.h
include/embindex.h
include/embinit.h
include/embmat.h
include/embmisc.h
include/embmol.h
include/embnmer.h
include/emboss.h
include/embpat.h
include/embpatlist.h
include/embpdb.h
include/embprop.h
include/embread.h
include/embshow.h
include/embsig.h
include/embword.h
include/eplplot/
include/eplplot/disptab.h
include/eplplot/drivers.h
include/eplplot/metadefs.h
include/eplplot/pdf.h
include/eplplot/plConfig.h
include/eplplot/plDevs.h
include/eplplot/plcore.h
include/eplplot/pldebug.h
include/eplplot/pldll.h
include/eplplot/plevent.h
include/eplplot/plfci-type1.h
include/eplplot/plhershey-unicode.h
include/eplplot/plplot.h
include/eplplot/plplotP.h
include/eplplot/plstrm.h
include/eplplot/plunicode-type1.h
include/eplplot/plxwd.h
include/eplplot/ps.h
lib/libajax.a
lib/libajax.la
@lib lib/libajax.so.${LIBajax_VERSION}
lib/libajaxg.a
lib/libajaxg.la
@lib lib/libajaxg.so.${LIBajaxg_VERSION}
lib/libeplplot.a
lib/libeplplot.la
@lib lib/libeplplot.so.${LIBeplplot_VERSION}
lib/libnucleus.a
lib/libnucleus.la
@lib lib/libnucleus.so.${LIBnucleus_VERSION}
share/EMBOSS/
share/EMBOSS/acd/
share/EMBOSS/acd/aaindexextract.acd
share/EMBOSS/acd/abiview.acd
share/EMBOSS/acd/acdc.acd
share/EMBOSS/acd/acdlog.acd
share/EMBOSS/acd/acdpretty.acd
share/EMBOSS/acd/acdtable.acd
share/EMBOSS/acd/acdtrace.acd
share/EMBOSS/acd/acdvalid.acd
share/EMBOSS/acd/ajbad.acd
share/EMBOSS/acd/ajfeatest.acd
share/EMBOSS/acd/ajtest.acd
share/EMBOSS/acd/aligncopy.acd
share/EMBOSS/acd/aligncopypair.acd
share/EMBOSS/acd/antigenic.acd
share/EMBOSS/acd/backtranambig.acd
share/EMBOSS/acd/backtranseq.acd
share/EMBOSS/acd/banana.acd
share/EMBOSS/acd/biosed.acd
share/EMBOSS/acd/btwisted.acd
share/EMBOSS/acd/cai.acd
share/EMBOSS/acd/chaos.acd
share/EMBOSS/acd/charge.acd
share/EMBOSS/acd/checktrans.acd
share/EMBOSS/acd/chips.acd
share/EMBOSS/acd/cirdna.acd
share/EMBOSS/acd/codcmp.acd
share/EMBOSS/acd/codcopy.acd
share/EMBOSS/acd/coderet.acd
share/EMBOSS/acd/codes.english
share/EMBOSS/acd/complex.acd
share/EMBOSS/acd/compseq.acd
share/EMBOSS/acd/cons.acd
share/EMBOSS/acd/consambig.acd
share/EMBOSS/acd/corbatest.acd
share/EMBOSS/acd/cpgplot.acd
share/EMBOSS/acd/cpgreport.acd
share/EMBOSS/acd/cusp.acd
share/EMBOSS/acd/cutgextract.acd
share/EMBOSS/acd/cutseq.acd
share/EMBOSS/acd/dan.acd
share/EMBOSS/acd/dbiblast.acd
share/EMBOSS/acd/dbifasta.acd
share/EMBOSS/acd/dbiflat.acd
share/EMBOSS/acd/dbigcg.acd
share/EMBOSS/acd/dbxfasta.acd
share/EMBOSS/acd/dbxflat.acd
share/EMBOSS/acd/dbxgcg.acd
share/EMBOSS/acd/dbxstat.acd
share/EMBOSS/acd/degapseq.acd
share/EMBOSS/acd/density.acd
share/EMBOSS/acd/descseq.acd
share/EMBOSS/acd/diffseq.acd
share/EMBOSS/acd/digest.acd
share/EMBOSS/acd/distmat.acd
share/EMBOSS/acd/dotmatcher.acd
share/EMBOSS/acd/dotpath.acd
share/EMBOSS/acd/dottup.acd
share/EMBOSS/acd/dreg.acd
share/EMBOSS/acd/edialign.acd
share/EMBOSS/acd/einverted.acd
share/EMBOSS/acd/embossdata.acd
share/EMBOSS/acd/embossversion.acd
share/EMBOSS/acd/emma.acd
share/EMBOSS/acd/emowse.acd
share/EMBOSS/acd/entrails.acd
share/EMBOSS/acd/entret.acd
share/EMBOSS/acd/epestfind.acd
share/EMBOSS/acd/eprimer3.acd
share/EMBOSS/acd/equicktandem.acd
share/EMBOSS/acd/est2genome.acd
share/EMBOSS/acd/etandem.acd
share/EMBOSS/acd/extractalign.acd
share/EMBOSS/acd/extractfeat.acd
share/EMBOSS/acd/extractseq.acd
share/EMBOSS/acd/featcopy.acd
share/EMBOSS/acd/featreport.acd
share/EMBOSS/acd/findkm.acd
share/EMBOSS/acd/freak.acd
share/EMBOSS/acd/fuzznuc.acd
share/EMBOSS/acd/fuzzpro.acd
share/EMBOSS/acd/fuzztran.acd
share/EMBOSS/acd/garnier.acd
share/EMBOSS/acd/geecee.acd
share/EMBOSS/acd/getorf.acd
share/EMBOSS/acd/giep.acd
share/EMBOSS/acd/groups.standard
share/EMBOSS/acd/helixturnhelix.acd
share/EMBOSS/acd/histogramtest.acd
share/EMBOSS/acd/hmoment.acd
share/EMBOSS/acd/iep.acd
share/EMBOSS/acd/infoalign.acd
share/EMBOSS/acd/infoseq.acd
share/EMBOSS/acd/intconv.acd
share/EMBOSS/acd/isochore.acd
share/EMBOSS/acd/jaspextract.acd
share/EMBOSS/acd/jaspscan.acd
share/EMBOSS/acd/keywords.standard
share/EMBOSS/acd/knowntypes.standard
share/EMBOSS/acd/lindna.acd
share/EMBOSS/acd/listor.acd
share/EMBOSS/acd/makenucseq.acd
share/EMBOSS/acd/makeprotseq.acd
share/EMBOSS/acd/marscan.acd
share/EMBOSS/acd/maskambignuc.acd
share/EMBOSS/acd/maskambigprot.acd
share/EMBOSS/acd/maskfeat.acd
share/EMBOSS/acd/maskseq.acd
share/EMBOSS/acd/matcher.acd
share/EMBOSS/acd/megamerger.acd
share/EMBOSS/acd/merger.acd
share/EMBOSS/acd/msbar.acd
share/EMBOSS/acd/mwcontam.acd
share/EMBOSS/acd/mwfilter.acd
share/EMBOSS/acd/needle.acd
share/EMBOSS/acd/newcoils.acd
share/EMBOSS/acd/newcpgreport.acd
share/EMBOSS/acd/newcpgseek.acd
share/EMBOSS/acd/newseq.acd
share/EMBOSS/acd/nohtml.acd
share/EMBOSS/acd/noreturn.acd
share/EMBOSS/acd/nospace.acd
share/EMBOSS/acd/notab.acd
share/EMBOSS/acd/notseq.acd
share/EMBOSS/acd/nthseq.acd
share/EMBOSS/acd/octanol.acd
share/EMBOSS/acd/oddcomp.acd
share/EMBOSS/acd/origsplitter.acd
share/EMBOSS/acd/origunion.acd
share/EMBOSS/acd/palindrome.acd
share/EMBOSS/acd/pasteseq.acd
share/EMBOSS/acd/patmatdb.acd
share/EMBOSS/acd/patmatmotifs.acd
share/EMBOSS/acd/patmattest.acd
share/EMBOSS/acd/pepcoil.acd
share/EMBOSS/acd/pepinfo.acd
share/EMBOSS/acd/pepnet.acd
share/EMBOSS/acd/pepstats.acd
share/EMBOSS/acd/pepwheel.acd
share/EMBOSS/acd/pepwindow.acd
share/EMBOSS/acd/pepwindowall.acd
share/EMBOSS/acd/plotcon.acd
share/EMBOSS/acd/plotorf.acd
share/EMBOSS/acd/polydot.acd
share/EMBOSS/acd/preg.acd
share/EMBOSS/acd/prettyplot.acd
share/EMBOSS/acd/prettyseq.acd
share/EMBOSS/acd/prima.acd
share/EMBOSS/acd/primers.acd
share/EMBOSS/acd/primersearch.acd
share/EMBOSS/acd/printsextract.acd
share/EMBOSS/acd/profit.acd
share/EMBOSS/acd/prophecy.acd
share/EMBOSS/acd/prophet.acd
share/EMBOSS/acd/prosextract.acd
share/EMBOSS/acd/pscan.acd
share/EMBOSS/acd/psiphi.acd
share/EMBOSS/acd/rebaseextract.acd
share/EMBOSS/acd/recoder.acd
share/EMBOSS/acd/redata.acd
share/EMBOSS/acd/remap.acd
share/EMBOSS/acd/restover.acd
share/EMBOSS/acd/restrict.acd
share/EMBOSS/acd/revseq.acd
share/EMBOSS/acd/sections.standard
share/EMBOSS/acd/seealso.acd
share/EMBOSS/acd/seqinfo.acd
share/EMBOSS/acd/seqmatchall.acd
share/EMBOSS/acd/seqret.acd
share/EMBOSS/acd/seqretall.acd
share/EMBOSS/acd/seqretallfeat.acd
share/EMBOSS/acd/seqretset.acd
share/EMBOSS/acd/seqretsingle.acd
share/EMBOSS/acd/seqretsplit.acd
share/EMBOSS/acd/seqrettype.acd
share/EMBOSS/acd/showalign.acd
share/EMBOSS/acd/showdb.acd
share/EMBOSS/acd/showfeat.acd
share/EMBOSS/acd/showorf.acd
share/EMBOSS/acd/showseq.acd
share/EMBOSS/acd/shuffleseq.acd
share/EMBOSS/acd/sigcleave.acd
share/EMBOSS/acd/silent.acd
share/EMBOSS/acd/sirna.acd
share/EMBOSS/acd/sixpack.acd
share/EMBOSS/acd/sizeseq.acd
share/EMBOSS/acd/skipredundant.acd
share/EMBOSS/acd/skipseq.acd
share/EMBOSS/acd/splitter.acd
share/EMBOSS/acd/stretcher.acd
share/EMBOSS/acd/stssearch.acd
share/EMBOSS/acd/supermatcher.acd
share/EMBOSS/acd/syco.acd
share/EMBOSS/acd/tcode.acd
share/EMBOSS/acd/testplot.acd
share/EMBOSS/acd/textsearch.acd
share/EMBOSS/acd/tfextract.acd
share/EMBOSS/acd/tfm.acd
share/EMBOSS/acd/tfscan.acd
share/EMBOSS/acd/tmap.acd
share/EMBOSS/acd/tranalign.acd
share/EMBOSS/acd/transeq.acd
share/EMBOSS/acd/treetypedisplay.acd
share/EMBOSS/acd/trimest.acd
share/EMBOSS/acd/trimseq.acd
share/EMBOSS/acd/twofeat.acd
share/EMBOSS/acd/union.acd
share/EMBOSS/acd/variables.standard
share/EMBOSS/acd/vectorstrip.acd
share/EMBOSS/acd/water.acd
share/EMBOSS/acd/whichdb.acd
share/EMBOSS/acd/wobble.acd
share/EMBOSS/acd/wordcount.acd
share/EMBOSS/acd/wordfinder.acd
share/EMBOSS/acd/wordmatch.acd
share/EMBOSS/acd/wossname.acd
share/EMBOSS/acd/yank.acd
share/EMBOSS/data/
share/EMBOSS/data/AAINDEX/
share/EMBOSS/data/AAINDEX/dummyfile
share/EMBOSS/data/CODONS/
share/EMBOSS/data/CODONS/Cut.index
share/EMBOSS/data/CODONS/Eacc.cut
share/EMBOSS/data/CODONS/Eacica.cut
share/EMBOSS/data/CODONS/Eadenovirus5.cut
share/EMBOSS/data/CODONS/Eadenovirus7.cut
share/EMBOSS/data/CODONS/Eagrtu.cut
share/EMBOSS/data/CODONS/Eaidlav.cut
share/EMBOSS/data/CODONS/Eanasp.cut
share/EMBOSS/data/CODONS/Eani.cut
share/EMBOSS/data/CODONS/Eani_h.cut
share/EMBOSS/data/CODONS/Eanidmit.cut
share/EMBOSS/data/CODONS/Earath.cut
share/EMBOSS/data/CODONS/Easn.cut
share/EMBOSS/data/CODONS/Eath.cut
share/EMBOSS/data/CODONS/Eatu.cut
share/EMBOSS/data/CODONS/Eavi.cut
share/EMBOSS/data/CODONS/Eazovi.cut
share/EMBOSS/data/CODONS/Ebacme.cut
share/EMBOSS/data/CODONS/Ebacst.cut
share/EMBOSS/data/CODONS/Ebacsu.cut
share/EMBOSS/data/CODONS/Ebacsu_high.cut
share/EMBOSS/data/CODONS/Ebja.cut
share/EMBOSS/data/CODONS/Ebly.cut
share/EMBOSS/data/CODONS/Ebme.cut
share/EMBOSS/data/CODONS/Ebmo.cut
share/EMBOSS/data/CODONS/Ebna.cut
share/EMBOSS/data/CODONS/Ebommo.cut
share/EMBOSS/data/CODONS/Ebov.cut
share/EMBOSS/data/CODONS/Ebovin.cut
share/EMBOSS/data/CODONS/Ebovsp.cut
share/EMBOSS/data/CODONS/Ebpphx.cut
share/EMBOSS/data/CODONS/Ebraja.cut
share/EMBOSS/data/CODONS/Ebrana.cut
share/EMBOSS/data/CODONS/Ebrare.cut
share/EMBOSS/data/CODONS/Ebst.cut
share/EMBOSS/data/CODONS/Ebsu.cut
share/EMBOSS/data/CODONS/Ebsu_h.cut
share/EMBOSS/data/CODONS/Ecac.cut
share/EMBOSS/data/CODONS/Ecaeel.cut
share/EMBOSS/data/CODONS/Ecal.cut
share/EMBOSS/data/CODONS/Ecanal.cut
share/EMBOSS/data/CODONS/Ecanfa.cut
share/EMBOSS/data/CODONS/Ecaucr.cut
share/EMBOSS/data/CODONS/Eccr.cut
share/EMBOSS/data/CODONS/Ecel.cut
share/EMBOSS/data/CODONS/Echi.cut
share/EMBOSS/data/CODONS/Echick.cut
share/EMBOSS/data/CODONS/Echicken.cut
share/EMBOSS/data/CODONS/Echisp.cut
share/EMBOSS/data/CODONS/Echk.cut
share/EMBOSS/data/CODONS/Echlre.cut
share/EMBOSS/data/CODONS/Echltr.cut
share/EMBOSS/data/CODONS/Echmp.cut
share/EMBOSS/data/CODONS/Echnt.cut
share/EMBOSS/data/CODONS/Echos.cut
share/EMBOSS/data/CODONS/Echzm.cut
share/EMBOSS/data/CODONS/Echzmrubp.cut
share/EMBOSS/data/CODONS/Ecloab.cut
share/EMBOSS/data/CODONS/Ecpx.cut
share/EMBOSS/data/CODONS/Ecre.cut
share/EMBOSS/data/CODONS/Ecrigr.cut
share/EMBOSS/data/CODONS/Ecrisp.cut
share/EMBOSS/data/CODONS/Ectr.cut
share/EMBOSS/data/CODONS/Ecyapa.cut
share/EMBOSS/data/CODONS/Edayhoff.cut
share/EMBOSS/data/CODONS/Eddi.cut
share/EMBOSS/data/CODONS/Eddi_h.cut
share/EMBOSS/data/CODONS/Edicdi.cut
share/EMBOSS/data/CODONS/Edicdi_high.cut
share/EMBOSS/data/CODONS/Edog.cut
share/EMBOSS/data/CODONS/Edro.cut
share/EMBOSS/data/CODONS/Edro_h.cut
share/EMBOSS/data/CODONS/Edrome.cut
share/EMBOSS/data/CODONS/Edrome_high.cut
share/EMBOSS/data/CODONS/Edrosophila.cut
share/EMBOSS/data/CODONS/Eeca.cut
share/EMBOSS/data/CODONS/Eeco.cut
share/EMBOSS/data/CODONS/Eeco_h.cut
share/EMBOSS/data/CODONS/Eecoli.cut
share/EMBOSS/data/CODONS/Eecoli_high.cut
share/EMBOSS/data/CODONS/Eemeni.cut
share/EMBOSS/data/CODONS/Eemeni_high.cut
share/EMBOSS/data/CODONS/Eemeni_mit.cut
share/EMBOSS/data/CODONS/Eerwct.cut
share/EMBOSS/data/CODONS/Ef1.cut
share/EMBOSS/data/CODONS/Efish.cut
share/EMBOSS/data/CODONS/Efmdvpolyp.cut
share/EMBOSS/data/CODONS/Ehaein.cut
share/EMBOSS/data/CODONS/Ehalma.cut
share/EMBOSS/data/CODONS/Ehalsa.cut
share/EMBOSS/data/CODONS/Eham.cut
share/EMBOSS/data/CODONS/Ehha.cut
share/EMBOSS/data/CODONS/Ehin.cut
share/EMBOSS/data/CODONS/Ehma.cut
share/EMBOSS/data/CODONS/Ehorvu.cut
share/EMBOSS/data/CODONS/Ehum.cut
share/EMBOSS/data/CODONS/Ehuman.cut
share/EMBOSS/data/CODONS/Ekla.cut
share/EMBOSS/data/CODONS/Eklepn.cut
share/EMBOSS/data/CODONS/Eklula.cut
share/EMBOSS/data/CODONS/Ekpn.cut
share/EMBOSS/data/CODONS/Elacdl.cut
share/EMBOSS/data/CODONS/Ella.cut
share/EMBOSS/data/CODONS/Elyces.cut
share/EMBOSS/data/CODONS/Emac.cut
share/EMBOSS/data/CODONS/Emacfa.cut
share/EMBOSS/data/CODONS/Emaize.cut
share/EMBOSS/data/CODONS/Emaize_chl.cut
share/EMBOSS/data/CODONS/Emam_h.cut
share/EMBOSS/data/CODONS/Emammal_high.cut
share/EMBOSS/data/CODONS/Emanse.cut
share/EMBOSS/data/CODONS/Emarpo_chl.cut
share/EMBOSS/data/CODONS/Emedsa.cut
share/EMBOSS/data/CODONS/Emetth.cut
share/EMBOSS/data/CODONS/Emixlg.cut
share/EMBOSS/data/CODONS/Emouse.cut
share/EMBOSS/data/CODONS/Emsa.cut
share/EMBOSS/data/CODONS/Emse.cut
share/EMBOSS/data/CODONS/Emta.cut
share/EMBOSS/data/CODONS/Emtu.cut
share/EMBOSS/data/CODONS/Emus.cut
share/EMBOSS/data/CODONS/Emussp.cut
share/EMBOSS/data/CODONS/Emva.cut
share/EMBOSS/data/CODONS/Emyctu.cut
share/EMBOSS/data/CODONS/Emze.cut
share/EMBOSS/data/CODONS/Emzecp.cut
share/EMBOSS/data/CODONS/Encr.cut
share/EMBOSS/data/CODONS/Eneigo.cut
share/EMBOSS/data/CODONS/Eneu.cut
share/EMBOSS/data/CODONS/Eneucr.cut
share/EMBOSS/data/CODONS/Engo.cut
share/EMBOSS/data/CODONS/Eoncmy.cut
share/EMBOSS/data/CODONS/Eoncsp.cut
share/EMBOSS/data/CODONS/Eorysa.cut
share/EMBOSS/data/CODONS/Eorysa_chl.cut
share/EMBOSS/data/CODONS/Epae.cut
share/EMBOSS/data/CODONS/Epea.cut
share/EMBOSS/data/CODONS/Epet.cut
share/EMBOSS/data/CODONS/Epethy.cut
share/EMBOSS/data/CODONS/Epfa.cut
share/EMBOSS/data/CODONS/Ephavu.cut
share/EMBOSS/data/CODONS/Ephix174.cut
share/EMBOSS/data/CODONS/Ephv.cut
share/EMBOSS/data/CODONS/Ephy.cut
share/EMBOSS/data/CODONS/Epig.cut
share/EMBOSS/data/CODONS/Eplafa.cut
share/EMBOSS/data/CODONS/Epolyomaa2.cut
share/EMBOSS/data/CODONS/Epombe.cut
share/EMBOSS/data/CODONS/Epombecai.cut
share/EMBOSS/data/CODONS/Epot.cut
share/EMBOSS/data/CODONS/Eppu.cut
share/EMBOSS/data/CODONS/Eprovu.cut
share/EMBOSS/data/CODONS/Epse.cut
share/EMBOSS/data/CODONS/Epseae.cut
share/EMBOSS/data/CODONS/Epsepu.cut
share/EMBOSS/data/CODONS/Epsesm.cut
share/EMBOSS/data/CODONS/Epsy.cut
share/EMBOSS/data/CODONS/Epvu.cut
share/EMBOSS/data/CODONS/Erab.cut
share/EMBOSS/data/CODONS/Erabbit.cut
share/EMBOSS/data/CODONS/Erabit.cut
share/EMBOSS/data/CODONS/Erabsp.cut
share/EMBOSS/data/CODONS/Erat.cut
share/EMBOSS/data/CODONS/Eratsp.cut
share/EMBOSS/data/CODONS/Erca.cut
share/EMBOSS/data/CODONS/Erhile.cut
share/EMBOSS/data/CODONS/Erhime.cut
share/EMBOSS/data/CODONS/Erhm.cut
share/EMBOSS/data/CODONS/Erhoca.cut
share/EMBOSS/data/CODONS/Erhosh.cut
share/EMBOSS/data/CODONS/Eric.cut
share/EMBOSS/data/CODONS/Erle.cut
share/EMBOSS/data/CODONS/Erme.cut
share/EMBOSS/data/CODONS/Ersp.cut
share/EMBOSS/data/CODONS/Esalsa.cut
share/EMBOSS/data/CODONS/Esalsp.cut
share/EMBOSS/data/CODONS/Esalty.cut
share/EMBOSS/data/CODONS/Esau.cut
share/EMBOSS/data/CODONS/Eschma.cut
share/EMBOSS/data/CODONS/Eschpo.cut
share/EMBOSS/data/CODONS/Eschpo_cai.cut
share/EMBOSS/data/CODONS/Eschpo_high.cut
share/EMBOSS/data/CODONS/Esco.cut
share/EMBOSS/data/CODONS/Eserma.cut
share/EMBOSS/data/CODONS/Esgi.cut
share/EMBOSS/data/CODONS/Esheep.cut
share/EMBOSS/data/CODONS/Eshp.cut
share/EMBOSS/data/CODONS/Eshpsp.cut
share/EMBOSS/data/CODONS/Esli.cut
share/EMBOSS/data/CODONS/Eslm.cut
share/EMBOSS/data/CODONS/Esma.cut
share/EMBOSS/data/CODONS/Esmi.cut
share/EMBOSS/data/CODONS/Esmu.cut
share/EMBOSS/data/CODONS/Esoltu.cut
share/EMBOSS/data/CODONS/Esoy.cut
share/EMBOSS/data/CODONS/Esoybn.cut
share/EMBOSS/data/CODONS/Espi.cut
share/EMBOSS/data/CODONS/Espiol.cut
share/EMBOSS/data/CODONS/Espn.cut
share/EMBOSS/data/CODONS/Espo.cut
share/EMBOSS/data/CODONS/Espo_h.cut
share/EMBOSS/data/CODONS/Espu.cut
share/EMBOSS/data/CODONS/Esta.cut
share/EMBOSS/data/CODONS/Estaau.cut
share/EMBOSS/data/CODONS/Estrco.cut
share/EMBOSS/data/CODONS/Estrmu.cut
share/EMBOSS/data/CODONS/Estrpn.cut
share/EMBOSS/data/CODONS/Estrpu.cut
share/EMBOSS/data/CODONS/Esty.cut
share/EMBOSS/data/CODONS/Esus.cut
share/EMBOSS/data/CODONS/Esv40.cut
share/EMBOSS/data/CODONS/Esyhsp.cut
share/EMBOSS/data/CODONS/Esynco.cut
share/EMBOSS/data/CODONS/Esyncy.cut
share/EMBOSS/data/CODONS/Esynsp.cut
share/EMBOSS/data/CODONS/Etbr.cut
share/EMBOSS/data/CODONS/Etcr.cut
share/EMBOSS/data/CODONS/Eter.cut
share/EMBOSS/data/CODONS/Etetsp.cut
share/EMBOSS/data/CODONS/Etetth.cut
share/EMBOSS/data/CODONS/Etheth.cut
share/EMBOSS/data/CODONS/Etob.cut
share/EMBOSS/data/CODONS/Etobac.cut
share/EMBOSS/data/CODONS/Etobac_chl.cut
share/EMBOSS/data/CODONS/Etobcp.cut
share/EMBOSS/data/CODONS/Etom.cut
share/EMBOSS/data/CODONS/Etrb.cut
share/EMBOSS/data/CODONS/Etrybr.cut
share/EMBOSS/data/CODONS/Etrycr.cut
share/EMBOSS/data/CODONS/Evco.cut
share/EMBOSS/data/CODONS/Evibch.cut
share/EMBOSS/data/CODONS/Ewheat.cut
share/EMBOSS/data/CODONS/Ewht.cut
share/EMBOSS/data/CODONS/Exel.cut
share/EMBOSS/data/CODONS/Exenla.cut
share/EMBOSS/data/CODONS/Exenopus.cut
share/EMBOSS/data/CODONS/Eyeast.cut
share/EMBOSS/data/CODONS/Eyeast_cai.cut
share/EMBOSS/data/CODONS/Eyeast_high.cut
share/EMBOSS/data/CODONS/Eyeast_mit.cut
share/EMBOSS/data/CODONS/Eyeastcai.cut
share/EMBOSS/data/CODONS/Eyen.cut
share/EMBOSS/data/CODONS/Eyeren.cut
share/EMBOSS/data/CODONS/Eyerpe.cut
share/EMBOSS/data/CODONS/Eysc.cut
share/EMBOSS/data/CODONS/Eysc_h.cut
share/EMBOSS/data/CODONS/Eyscmt.cut
share/EMBOSS/data/CODONS/Eysp.cut
share/EMBOSS/data/CODONS/Ezebrafish.cut
share/EMBOSS/data/CODONS/Ezma.cut
share/EMBOSS/data/EBLOSUM30
share/EMBOSS/data/EBLOSUM35
share/EMBOSS/data/EBLOSUM40
share/EMBOSS/data/EBLOSUM45
share/EMBOSS/data/EBLOSUM50
share/EMBOSS/data/EBLOSUM55
share/EMBOSS/data/EBLOSUM60
share/EMBOSS/data/EBLOSUM62
share/EMBOSS/data/EBLOSUM62-12
share/EMBOSS/data/EBLOSUM65
share/EMBOSS/data/EBLOSUM70
share/EMBOSS/data/EBLOSUM75
share/EMBOSS/data/EBLOSUM80
share/EMBOSS/data/EBLOSUM85
share/EMBOSS/data/EBLOSUM90
share/EMBOSS/data/EBLOSUMN
share/EMBOSS/data/EDNAFULL
share/EMBOSS/data/EDNAMAT
share/EMBOSS/data/EGC.0
share/EMBOSS/data/EGC.1
share/EMBOSS/data/EGC.10
share/EMBOSS/data/EGC.11
share/EMBOSS/data/EGC.12
share/EMBOSS/data/EGC.13
share/EMBOSS/data/EGC.14
share/EMBOSS/data/EGC.15
share/EMBOSS/data/EGC.16
share/EMBOSS/data/EGC.2
share/EMBOSS/data/EGC.21
share/EMBOSS/data/EGC.22
share/EMBOSS/data/EGC.23
share/EMBOSS/data/EGC.3
share/EMBOSS/data/EGC.4
share/EMBOSS/data/EGC.5
share/EMBOSS/data/EGC.6
share/EMBOSS/data/EGC.9
share/EMBOSS/data/EGC.index
share/EMBOSS/data/EGC.txt
share/EMBOSS/data/ENUC.4.2
share/EMBOSS/data/ENUC.4.4
share/EMBOSS/data/EPAM10
share/EMBOSS/data/EPAM100
share/EMBOSS/data/EPAM110
share/EMBOSS/data/EPAM120
share/EMBOSS/data/EPAM130
share/EMBOSS/data/EPAM140
share/EMBOSS/data/EPAM150
share/EMBOSS/data/EPAM160
share/EMBOSS/data/EPAM170
share/EMBOSS/data/EPAM180
share/EMBOSS/data/EPAM190
share/EMBOSS/data/EPAM20
share/EMBOSS/data/EPAM200
share/EMBOSS/data/EPAM210
share/EMBOSS/data/EPAM220
share/EMBOSS/data/EPAM230
share/EMBOSS/data/EPAM240
share/EMBOSS/data/EPAM250
share/EMBOSS/data/EPAM260
share/EMBOSS/data/EPAM270
share/EMBOSS/data/EPAM280
share/EMBOSS/data/EPAM290
share/EMBOSS/data/EPAM30
share/EMBOSS/data/EPAM300
share/EMBOSS/data/EPAM310
share/EMBOSS/data/EPAM320
share/EMBOSS/data/EPAM330
share/EMBOSS/data/EPAM340
share/EMBOSS/data/EPAM350
share/EMBOSS/data/EPAM360
share/EMBOSS/data/EPAM370
share/EMBOSS/data/EPAM380
share/EMBOSS/data/EPAM390
share/EMBOSS/data/EPAM40
share/EMBOSS/data/EPAM400
share/EMBOSS/data/EPAM410
share/EMBOSS/data/EPAM420
share/EMBOSS/data/EPAM430
share/EMBOSS/data/EPAM440
share/EMBOSS/data/EPAM450
share/EMBOSS/data/EPAM460
share/EMBOSS/data/EPAM470
share/EMBOSS/data/EPAM480
share/EMBOSS/data/EPAM490
share/EMBOSS/data/EPAM50
share/EMBOSS/data/EPAM500
share/EMBOSS/data/EPAM60
share/EMBOSS/data/EPAM70
share/EMBOSS/data/EPAM80
share/EMBOSS/data/EPAM90
share/EMBOSS/data/Eaa_acc_surface.dat
share/EMBOSS/data/Eaa_hydropathy.dat
share/EMBOSS/data/Eaa_properties.dat
share/EMBOSS/data/Eamino.dat
share/EMBOSS/data/Eangles.dat
share/EMBOSS/data/Eangles_tri.dat
share/EMBOSS/data/Eantigenic.dat
share/EMBOSS/data/Ebases.iub
share/EMBOSS/data/Edayhoff.freq
share/EMBOSS/data/Edna.melt
share/EMBOSS/data/Eembl.ior
share/EMBOSS/data/Eenergy.dat
share/EMBOSS/data/Efeatures.embl
share/EMBOSS/data/Efeatures.emboss
share/EMBOSS/data/Efeatures.gff
share/EMBOSS/data/Efeatures.gff3
share/EMBOSS/data/Efeatures.gff3protein
share/EMBOSS/data/Efeatures.gffprotein
share/EMBOSS/data/Efeatures.pir
share/EMBOSS/data/Efeatures.protein
share/EMBOSS/data/Efeatures.swiss
share/EMBOSS/data/Efreqs.dat
share/EMBOSS/data/Ehet.dat
share/EMBOSS/data/Ehth.dat
share/EMBOSS/data/Ehth87.dat
share/EMBOSS/data/Emass.dat
share/EMBOSS/data/Emassmod.dat
share/EMBOSS/data/Ememe.dat
share/EMBOSS/data/Emolwt.dat
share/EMBOSS/data/Emwfilter.dat
share/EMBOSS/data/Enakai.dat
share/EMBOSS/data/Epepcoil.dat
share/EMBOSS/data/Epk.dat
share/EMBOSS/data/Epprofile
share/EMBOSS/data/Eprior1.plib
share/EMBOSS/data/Eprior30.plib
share/EMBOSS/data/Eresidues.iub
share/EMBOSS/data/Erna.melt
share/EMBOSS/data/Esig.euk
share/EMBOSS/data/Esig.pro
share/EMBOSS/data/Etags.embl
share/EMBOSS/data/Etags.emboss
share/EMBOSS/data/Etags.gff
share/EMBOSS/data/Etags.gff3
share/EMBOSS/data/Etags.gffprotein
share/EMBOSS/data/Etags.pir
share/EMBOSS/data/Etags.protein
share/EMBOSS/data/Etags.swiss
share/EMBOSS/data/Etcode.dat
share/EMBOSS/data/Evdw.dat
share/EMBOSS/data/Ewhite-wimley.dat
share/EMBOSS/data/JASPAR_CNE/
share/EMBOSS/data/JASPAR_CNE/dummyfile
share/EMBOSS/data/JASPAR_CORE/
share/EMBOSS/data/JASPAR_CORE/dummyfile
share/EMBOSS/data/JASPAR_FAM/
share/EMBOSS/data/JASPAR_FAM/dummyfile
share/EMBOSS/data/JASPAR_PHYLOFACTS/
share/EMBOSS/data/JASPAR_PHYLOFACTS/dummyfile
share/EMBOSS/data/JASPAR_POLII/
share/EMBOSS/data/JASPAR_POLII/dummyfile
share/EMBOSS/data/JASPAR_SPLICE/
share/EMBOSS/data/JASPAR_SPLICE/dummyfile
share/EMBOSS/data/Matrices.nucleotide
share/EMBOSS/data/Matrices.protein
share/EMBOSS/data/Matrices.proteinstructure
share/EMBOSS/data/PRINTS/
share/EMBOSS/data/PRINTS/dummyfile
share/EMBOSS/data/PROSITE/
share/EMBOSS/data/PROSITE/dummyfile
share/EMBOSS/data/REBASE/
share/EMBOSS/data/REBASE/dummyfile
share/EMBOSS/data/edialignmat
share/EMBOSS/data/embossre.equ
share/EMBOSS/data/tp400_dna
share/EMBOSS/data/tp400_prot
share/EMBOSS/data/tp400_trans
share/EMBOSS/emboss.default.template
share/EMBOSS/jemboss/
share/EMBOSS/jemboss/LICENSE
share/EMBOSS/jemboss/README
share/EMBOSS/jemboss/api/
share/EMBOSS/jemboss/api/allclasses-frame.html
share/EMBOSS/jemboss/api/deprecated-list.html
share/EMBOSS/jemboss/api/getClasses.pl
share/EMBOSS/jemboss/api/help-doc.html
share/EMBOSS/jemboss/api/index-all.html
share/EMBOSS/jemboss/api/index.html
share/EMBOSS/jemboss/api/makeDocs.csh
share/EMBOSS/jemboss/api/org/
share/EMBOSS/jemboss/api/org/emboss/
share/EMBOSS/jemboss/api/org/emboss/jemboss/
share/EMBOSS/jemboss/api/org/emboss/jemboss/Jemboss.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/Jemboss.winExit.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/JembossLogo.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/JembossParams.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/BuildProgramMenu.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ResultsMenuBar.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/SetUpMenuBar.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ShowResultSet.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ShowSavedResults.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/SwingWorker.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/DragTree.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.PopupListener.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileNode.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileSaving.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/BuildJembossForm.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/JembossComboPopup.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/JembossComboPopup.myComboUI.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/ListFilePanel.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SectionPanel.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SetInFileCard.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SetOutFileCard.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldFloat.DecimalNumberDocument.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldFloat.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.WholeNumberDocument.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldSink.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/CutNPasteTextArea.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/FileChooser.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/InputSequenceAttributes.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/OutputSequenceAttributes.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/SequenceFilter.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/TextAreaSink.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/Database.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/ProgList.HorizontalMenu.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/ProgList.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/Splash.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/AcdFunResolve.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/AcdVarResolve.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/Ajax.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/Dependent.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/ParseAcd.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/ApplicationFields.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/ApplicationParam.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/
share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/JembossProcess.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/ListFile.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/ResultList.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/RunEmbossApplication.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/AuthPopup.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/CallAjax.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/GetWossname.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/JembossRun.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/JembossSoapException.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/PendingResults.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/PrivateRequest.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/ResListView.html
share/EMBOSS/jemboss/api/overview-tree.html
share/EMBOSS/jemboss/api/package-list
share/EMBOSS/jemboss/api/packages.html
share/EMBOSS/jemboss/api/serialized-form.html
share/EMBOSS/jemboss/api/stylesheet.css
share/EMBOSS/jemboss/images/
share/EMBOSS/jemboss/images/Backward_arrow_button.gif
share/EMBOSS/jemboss/images/Forward_arrow_button.gif
share/EMBOSS/jemboss/images/Go_button.gif
share/EMBOSS/jemboss/images/Information_button.gif
share/EMBOSS/jemboss/images/Jemboss_logo_greyback.gif
share/EMBOSS/jemboss/images/Jemboss_logo_large.gif
share/EMBOSS/jemboss/images/Jemboss_logo_small.gif
share/EMBOSS/jemboss/images/Job_manager_button.gif
share/EMBOSS/jemboss/images/Refresh_button.gif
share/EMBOSS/jemboss/images/Refresh_button2.gif
share/EMBOSS/jemboss/lib/
share/EMBOSS/jemboss/lib/JembossPrintAlignment.jar
share/EMBOSS/jemboss/lib/README
share/EMBOSS/jemboss/lib/activation.jar
share/EMBOSS/jemboss/lib/axis/
share/EMBOSS/jemboss/lib/axis/axis-ant.jar
share/EMBOSS/jemboss/lib/axis/axis.jar
share/EMBOSS/jemboss/lib/axis/commons-discovery.jar
share/EMBOSS/jemboss/lib/axis/commons-logging.jar
share/EMBOSS/jemboss/lib/axis/jaxrpc.jar
share/EMBOSS/jemboss/lib/axis/log4j-1.2.8.jar
share/EMBOSS/jemboss/lib/axis/saaj.jar
share/EMBOSS/jemboss/lib/axis/servlet.jar
share/EMBOSS/jemboss/lib/axis/wsdl4j.jar
share/EMBOSS/jemboss/lib/grout.jar
share/EMBOSS/jemboss/lib/jakarta-regexp-1.2.jar
share/EMBOSS/jemboss/lib/jalview.jar
share/EMBOSS/jemboss/lib/mail.jar
share/EMBOSS/jemboss/lib/xerces.jar
share/EMBOSS/jemboss/org/
share/EMBOSS/jemboss/org/emboss/
share/EMBOSS/jemboss/org/emboss/jemboss/
share/EMBOSS/jemboss/org/emboss/jemboss/Jemboss.java
share/EMBOSS/jemboss/org/emboss/jemboss/JembossJarUtil.java
share/EMBOSS/jemboss/org/emboss/jemboss/JembossLogo.java
share/EMBOSS/jemboss/org/emboss/jemboss/JembossParams.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/
share/EMBOSS/jemboss/org/emboss/jemboss/draw/Block.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/DNADraw.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/EmbossCirdnaReader.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/GeneticMarker.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/LineAttribute.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/PrintDNAImage.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/RestrictionEnzyme.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/Ticks.java
share/EMBOSS/jemboss/org/emboss/jemboss/draw/Wizard.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/
share/EMBOSS/jemboss/org/emboss/jemboss/editor/AlignApplet.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/AlignJFrame.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/ColourJFrame.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/ColourMenu.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/ColourPanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/Consensus.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/ConsensusOptions.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/GraphicSequenceCollection.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/GroutAlignJFrame.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/GroutAlignJFrameEvent.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/GroutAlignJFrameListener.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/GroutGraphicSequenceCollection.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/GroutGraphicSequenceCollectionEvent.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/GroutGraphicSequenceCollectionListener.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/GroutSequence.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/GroutSequenceJPanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/IDTableJFrame.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/Matrix.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/MatrixJFrame.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/Paste.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/PatternJFrame.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/PlotConsensus.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/PrettyPlotJFrame.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/PrintAlignment.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/PrintAlignmentImage.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/PrintableJTable.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/Sequence.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/SequenceJPanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/SequenceNameJButton.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/SequenceProperties.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/SequenceReader.java
share/EMBOSS/jemboss/org/emboss/jemboss/editor/SequenceSaver.java
share/EMBOSS/jemboss/org/emboss/jemboss/graphics/
share/EMBOSS/jemboss/org/emboss/jemboss/graphics/Graph2DPlot.java
share/EMBOSS/jemboss/org/emboss/jemboss/graphics/PrintPlot.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/
share/EMBOSS/jemboss/org/emboss/jemboss/gui/AdvancedOptions.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/Browser.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/BuildProgramMenu.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/Favorites.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/ImageIconJPanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/KeywordSearch.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/LaunchJalView.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/MemoryComboBox.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/ResultsMenuBar.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/ScrollPanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/SequenceData.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/SequenceList.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/SetUpMenuBar.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/ShowResultSet.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/ShowSavedResults.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/SplashThread.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/SwingWorker.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/DragTree.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileEditorDisplay.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileNode.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileSave.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileSaving.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/LocalAndRemoteFileTreeFrame.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/LocalTreeToolBar.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/RemoteDragTree.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/RemoteFileNode.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/RemoteFileTreePanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/AlignFormat.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/ApplicationNamePanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/BuildJembossForm.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/JembossComboPopup.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/LabelTextBox.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/ListFilePanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/MultiLineToolTipUI.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/MultiTextField.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/PlafMacros.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/ReportFormat.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/SectionPanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/Separator.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/SetInFileCard.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/SetOutFileCard.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/TextFieldFloat.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/TextFieldInt.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/TextFieldSink.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/CutNPasteTextArea.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/FileChooser.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/InputSequenceAttributes.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/OutputSequenceAttributes.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/SequenceFilter.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/TextAreaSink.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup/
share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup/Database.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup/ProgList.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/
share/EMBOSS/jemboss/org/emboss/jemboss/parser/AcdFunResolve.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/AcdVarResolve.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/AcdVariableResolve.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/Ajax.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/AjaxUtil.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/Dependent.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/ParseAcd.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd/
share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd/ApplicationFields.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd/ApplicationParam.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/
share/EMBOSS/jemboss/org/emboss/jemboss/programs/BatchUpdateTimer.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/JembossProcess.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/ListFile.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/ResultList.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/ResultsUpdateTimer.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/RunEmbossApplication.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/RunEmbossApplication2.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/
share/EMBOSS/jemboss/org/emboss/jemboss/server/AppendToLogFileThread.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossAuthServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossFileAuthServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossFileServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossThread.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/TestPrivateServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/TestPublicServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/
share/EMBOSS/jemboss/org/emboss/jemboss/soap/AuthPopup.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/CallAjax.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/FileList.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/FileRoots.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetACD.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetHelp.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetWossname.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/JembossRun.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/JembossSoapException.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/MakeFileSafe.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/PendingResults.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/PrivateRequest.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/PublicRequest.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/ServerSetup.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/ShowDB.java
share/EMBOSS/jemboss/readme.html
share/EMBOSS/jemboss/resources/
share/EMBOSS/jemboss/resources/filemgr.html
share/EMBOSS/jemboss/resources/jemboss.properties
share/EMBOSS/jemboss/resources/readme.html
share/EMBOSS/jemboss/resources/readmeAlign.html
share/EMBOSS/jemboss/resources/readmeDNADraw.html
share/EMBOSS/jemboss/resources/results.html
share/EMBOSS/jemboss/resources/seqList.html
share/EMBOSS/jemboss/resources/version
share/EMBOSS/jemboss/runJemboss.sh
share/EMBOSS/jemboss/utils/
share/EMBOSS/jemboss/utils/README
share/EMBOSS/jemboss/utils/install-jemboss-server.sh
share/EMBOSS/jemboss/utils/keys.sh
share/EMBOSS/jemboss/utils/makeFileManagerJNLP.sh
share/EMBOSS/jemboss/utils/makeJNLP.sh
share/EMBOSS/jemboss/utils/makeJar.csh
share/EMBOSS/jemboss/utils/template.html
share/EMBOSS/plstnd5.fnt
share/EMBOSS/plxtnd5.fnt
share/EMBOSS/test/
share/EMBOSS/test/data/
share/EMBOSS/test/data/104k.nbrf
share/EMBOSS/test/data/aaindex1.test
share/EMBOSS/test/data/aligna.dna
share/EMBOSS/test/data/aligna.prot
share/EMBOSS/test/data/alignapart.dna
share/EMBOSS/test/data/alignapart.prot
share/EMBOSS/test/data/alignb.dna
share/EMBOSS/test/data/alignb.prot
share/EMBOSS/test/data/cutg.codon
share/EMBOSS/test/data/dna.acedb
share/EMBOSS/test/data/dna.aln
share/EMBOSS/test/data/dna.asn1
share/EMBOSS/test/data/dna.codata
share/EMBOSS/test/data/dna.embl
share/EMBOSS/test/data/dna.fasta
share/EMBOSS/test/data/dna.fitch
share/EMBOSS/test/data/dna.gcg
share/EMBOSS/test/data/dna.gcg8
share/EMBOSS/test/data/dna.genbank
share/EMBOSS/test/data/dna.ig
share/EMBOSS/test/data/dna.m-acedb
share/EMBOSS/test/data/dna.m-codata
share/EMBOSS/test/data/dna.m-embl
share/EMBOSS/test/data/dna.m-fasta
share/EMBOSS/test/data/dna.m-fasta-long
share/EMBOSS/test/data/dna.m-ncbi
share/EMBOSS/test/data/dna.m-strider
share/EMBOSS/test/data/dna.msf
share/EMBOSS/test/data/dna.msf8
share/EMBOSS/test/data/dna.ncbi
share/EMBOSS/test/data/dna.phylip
share/EMBOSS/test/data/dna.phylip3
share/EMBOSS/test/data/dna.staden
share/EMBOSS/test/data/dna.strider
share/EMBOSS/test/data/dna.text
share/EMBOSS/test/data/feat.emft
share/EMBOSS/test/data/feat.fasta
share/EMBOSS/test/data/feat.pir
share/EMBOSS/test/data/mw1.dat
share/EMBOSS/test/data/mw2.dat
share/EMBOSS/test/data/mw3.dat
share/EMBOSS/test/data/nuc.pat
share/EMBOSS/test/data/nucseq.pat
share/EMBOSS/test/data/nucsimple.pat
share/EMBOSS/test/data/opsd.msf
share/EMBOSS/test/data/paamir.gff
share/EMBOSS/test/data/paamir.gff3
share/EMBOSS/test/data/paamir.pep
share/EMBOSS/test/data/pax6_cdna.fasta
share/EMBOSS/test/data/prints.test
share/EMBOSS/test/data/prosite.dat
share/EMBOSS/test/data/prosite.doc
share/EMBOSS/test/data/prot.acedb
share/EMBOSS/test/data/prot.codata
share/EMBOSS/test/data/prot.fasta
share/EMBOSS/test/data/prot.gcg
share/EMBOSS/test/data/prot.gcg8
share/EMBOSS/test/data/prot.ig
share/EMBOSS/test/data/prot.m-acedb
share/EMBOSS/test/data/prot.m-codata
share/EMBOSS/test/data/prot.m-fasta
share/EMBOSS/test/data/prot.m-nbrf
share/EMBOSS/test/data/prot.m-ncbi
share/EMBOSS/test/data/prot.m-swiss
share/EMBOSS/test/data/prot.nbrf
share/EMBOSS/test/data/prot.ncbi
share/EMBOSS/test/data/prot.swiss
share/EMBOSS/test/data/prot.text
share/EMBOSS/test/data/site.dat
share/EMBOSS/test/data/tranalign.pep
share/EMBOSS/test/data/tranalign.seq
share/EMBOSS/test/data/untrimmed.seq
share/EMBOSS/test/data/vtest.seq
share/EMBOSS/test/data/withrefm
share/EMBOSS/test/data/z83307.seq
share/EMBOSS/test/embl/
share/EMBOSS/test/embl/acnum.hit
share/EMBOSS/test/embl/acnum.trg
share/EMBOSS/test/embl/des.hit
share/EMBOSS/test/embl/des.trg
share/EMBOSS/test/embl/division.lkp
share/EMBOSS/test/embl/entrynam.idx
share/EMBOSS/test/embl/est.dat
share/EMBOSS/test/embl/fun.dat
share/EMBOSS/test/embl/hum1.dat
share/EMBOSS/test/embl/inv.dat
share/EMBOSS/test/embl/keyword.hit
share/EMBOSS/test/embl/keyword.trg
share/EMBOSS/test/embl/pln.dat
share/EMBOSS/test/embl/pro.dat
share/EMBOSS/test/embl/rod.dat
share/EMBOSS/test/embl/seqvn.hit
share/EMBOSS/test/embl/seqvn.trg
share/EMBOSS/test/embl/sts.dat
share/EMBOSS/test/embl/taxon.hit
share/EMBOSS/test/embl/taxon.trg
share/EMBOSS/test/embl/vrl.dat
share/EMBOSS/test/embl/vrt.dat
share/EMBOSS/test/genbank/
share/EMBOSS/test/genbank/acnum.hit
share/EMBOSS/test/genbank/acnum.trg
share/EMBOSS/test/genbank/des.hit
share/EMBOSS/test/genbank/des.trg
share/EMBOSS/test/genbank/division.lkp
share/EMBOSS/test/genbank/entrynam.idx
share/EMBOSS/test/genbank/gbbct1.seq
share/EMBOSS/test/genbank/gbest1.seq
share/EMBOSS/test/genbank/gbinv1.seq
share/EMBOSS/test/genbank/gbpln1.seq
share/EMBOSS/test/genbank/gbpln2.seq
share/EMBOSS/test/genbank/gbpri1.seq
share/EMBOSS/test/genbank/gbrod1.seq
share/EMBOSS/test/genbank/gbsts1.seq
share/EMBOSS/test/genbank/gbvrl1.seq
share/EMBOSS/test/genbank/gbvrt.seq
share/EMBOSS/test/genbank/keyword.hit
share/EMBOSS/test/genbank/keyword.trg
share/EMBOSS/test/genbank/seqvn.hit
share/EMBOSS/test/genbank/seqvn.trg
share/EMBOSS/test/genbank/taxon.hit
share/EMBOSS/test/genbank/taxon.trg
share/EMBOSS/test/pir/
share/EMBOSS/test/pir/acnum.hit
share/EMBOSS/test/pir/acnum.trg
share/EMBOSS/test/pir/des.hit
share/EMBOSS/test/pir/des.trg
share/EMBOSS/test/pir/division.lkp
share/EMBOSS/test/pir/entrynam.idx
share/EMBOSS/test/pir/keyword.hit
share/EMBOSS/test/pir/keyword.trg
share/EMBOSS/test/pir/pir1.header
share/EMBOSS/test/pir/pir1.names
share/EMBOSS/test/pir/pir1.numbers
share/EMBOSS/test/pir/pir1.offset
share/EMBOSS/test/pir/pir1.ref
share/EMBOSS/test/pir/pir1.seq
share/EMBOSS/test/pir/pir2.header
share/EMBOSS/test/pir/pir2.names
share/EMBOSS/test/pir/pir2.numbers
share/EMBOSS/test/pir/pir2.offset
share/EMBOSS/test/pir/pir2.ref
share/EMBOSS/test/pir/pir2.seq
share/EMBOSS/test/pir/pir3.header
share/EMBOSS/test/pir/pir3.names
share/EMBOSS/test/pir/pir3.numbers
share/EMBOSS/test/pir/pir3.offset
share/EMBOSS/test/pir/pir3.ref
share/EMBOSS/test/pir/pir3.seq
share/EMBOSS/test/pir/pir4.header
share/EMBOSS/test/pir/pir4.names
share/EMBOSS/test/pir/pir4.numbers
share/EMBOSS/test/pir/pir4.offset
share/EMBOSS/test/pir/pir4.ref
share/EMBOSS/test/pir/pir4.seq
share/EMBOSS/test/pir/taxon.hit
share/EMBOSS/test/pir/taxon.trg
share/EMBOSS/test/swiss/
share/EMBOSS/test/swiss/acnum.hit
share/EMBOSS/test/swiss/acnum.trg
share/EMBOSS/test/swiss/des.hit
share/EMBOSS/test/swiss/des.trg
share/EMBOSS/test/swiss/division.lkp
share/EMBOSS/test/swiss/entrynam.idx
share/EMBOSS/test/swiss/keyword.hit
share/EMBOSS/test/swiss/keyword.trg
share/EMBOSS/test/swiss/seq.dat
share/EMBOSS/test/swiss/seqvn.hit
share/EMBOSS/test/swiss/seqvn.trg
share/EMBOSS/test/swiss/taxon.hit
share/EMBOSS/test/swiss/taxon.trg
share/EMBOSS/test/swnew/
share/EMBOSS/test/swnew/acnum.hit
share/EMBOSS/test/swnew/acnum.trg
share/EMBOSS/test/swnew/des.hit
share/EMBOSS/test/swnew/des.trg
share/EMBOSS/test/swnew/division.lkp
share/EMBOSS/test/swnew/entrynam.idx
share/EMBOSS/test/swnew/keyword.hit
share/EMBOSS/test/swnew/keyword.trg
share/EMBOSS/test/swnew/seqvn.hit
share/EMBOSS/test/swnew/seqvn.trg
share/EMBOSS/test/swnew/taxon.hit
share/EMBOSS/test/swnew/taxon.trg
share/EMBOSS/test/swnew/trembl.dat
share/EMBOSS/test/testdb/
share/EMBOSS/test/testdb/acnum.hit
share/EMBOSS/test/testdb/acnum.trg
share/EMBOSS/test/testdb/des.hit
share/EMBOSS/test/testdb/des.trg
share/EMBOSS/test/testdb/division.lkp
share/EMBOSS/test/testdb/entrynam.idx
share/EMBOSS/test/testdb/testdb.fasta
share/doc/EMBOSS/
share/doc/EMBOSS/manuals/
share/doc/EMBOSS/manuals/EMBOSS-FreeBSD-HOWTO.txt
share/doc/EMBOSS/manuals/admin.aux
share/doc/EMBOSS/manuals/admin.dvi
share/doc/EMBOSS/manuals/admin.log
share/doc/EMBOSS/manuals/admin.pdf
share/doc/EMBOSS/manuals/admin.ps
share/doc/EMBOSS/manuals/admin.tex
share/doc/EMBOSS/manuals/admin.toc
share/doc/EMBOSS/manuals/adminguide.tar.gz
share/doc/EMBOSS/manuals/domainatrix.doc
share/doc/EMBOSS/manuals/emboss.sty
share/doc/EMBOSS/manuals/emboss_qg.pdf
share/doc/EMBOSS/manuals/emboss_qg.ps
share/doc/EMBOSS/manuals/fdl.txt
share/doc/EMBOSS/manuals/program.ps.gz
share/doc/EMBOSS/programs/
share/doc/EMBOSS/programs/html/
share/doc/EMBOSS/programs/html/aaindexextract.html
share/doc/EMBOSS/programs/html/abiview.1.abiview.gif
share/doc/EMBOSS/programs/html/abiview.html
share/doc/EMBOSS/programs/html/acd_group.html
share/doc/EMBOSS/programs/html/acdc.html
share/doc/EMBOSS/programs/html/acdlog.html
share/doc/EMBOSS/programs/html/acdpretty.html
share/doc/EMBOSS/programs/html/acdtable.html
share/doc/EMBOSS/programs/html/acdtrace.html
share/doc/EMBOSS/programs/html/acdvalid.html
share/doc/EMBOSS/programs/html/ajtest.html
share/doc/EMBOSS/programs/html/aligncopy.html
share/doc/EMBOSS/programs/html/aligncopypair.html
share/doc/EMBOSS/programs/html/alignment_consensus_group.html
share/doc/EMBOSS/programs/html/alignment_differences_group.html
share/doc/EMBOSS/programs/html/alignment_dot_plots_group.html
share/doc/EMBOSS/programs/html/alignment_global_group.html
share/doc/EMBOSS/programs/html/alignment_local_group.html
share/doc/EMBOSS/programs/html/alignment_multiple_group.html
share/doc/EMBOSS/programs/html/antigenic.html
share/doc/EMBOSS/programs/html/assembly_fragment_assembly_group.html
share/doc/EMBOSS/programs/html/backtranambig.html
share/doc/EMBOSS/programs/html/backtranseq.html
share/doc/EMBOSS/programs/html/banana.1.banana.gif
share/doc/EMBOSS/programs/html/banana.html
share/doc/EMBOSS/programs/html/biosed.html
share/doc/EMBOSS/programs/html/btwisted.html
share/doc/EMBOSS/programs/html/cai.html
share/doc/EMBOSS/programs/html/chaos.1.chaos.gif
share/doc/EMBOSS/programs/html/chaos.html
share/doc/EMBOSS/programs/html/charge.html
share/doc/EMBOSS/programs/html/checktrans.html
share/doc/EMBOSS/programs/html/chips.html
share/doc/EMBOSS/programs/html/cirdna.1.cirdna.gif
share/doc/EMBOSS/programs/html/cirdna.html
share/doc/EMBOSS/programs/html/codcmp.html
share/doc/EMBOSS/programs/html/codcopy.html
share/doc/EMBOSS/programs/html/coderet.html
share/doc/EMBOSS/programs/html/complex.html
share/doc/EMBOSS/programs/html/compseq.html
share/doc/EMBOSS/programs/html/cons.html
share/doc/EMBOSS/programs/html/consambig.html
share/doc/EMBOSS/programs/html/cpgplot.1.cpgplot.gif
share/doc/EMBOSS/programs/html/cpgplot.html
share/doc/EMBOSS/programs/html/cpgreport.html
share/doc/EMBOSS/programs/html/cusp.html
share/doc/EMBOSS/programs/html/cutgextract.html
share/doc/EMBOSS/programs/html/cutseq.html
share/doc/EMBOSS/programs/html/dan.2.dan.gif
share/doc/EMBOSS/programs/html/dan.html
share/doc/EMBOSS/programs/html/dbiblast.html
share/doc/EMBOSS/programs/html/dbifasta.html
share/doc/EMBOSS/programs/html/dbiflat.html
share/doc/EMBOSS/programs/html/dbigcg.html
share/doc/EMBOSS/programs/html/dbxfasta.html
share/doc/EMBOSS/programs/html/dbxflat.html
share/doc/EMBOSS/programs/html/dbxgcg.html
share/doc/EMBOSS/programs/html/degapseq.html
share/doc/EMBOSS/programs/html/density.html
share/doc/EMBOSS/programs/html/descseq.html
share/doc/EMBOSS/programs/html/diffseq.html
share/doc/EMBOSS/programs/html/digest.html
share/doc/EMBOSS/programs/html/display_group.html
share/doc/EMBOSS/programs/html/distmat.html
share/doc/EMBOSS/programs/html/dotmatcher.1.dotmatcher.gif
share/doc/EMBOSS/programs/html/dotmatcher.html
share/doc/EMBOSS/programs/html/dotpath.1.dotpath.gif
share/doc/EMBOSS/programs/html/dotpath.html
share/doc/EMBOSS/programs/html/dottup.1.dottup.gif
share/doc/EMBOSS/programs/html/dottup.html
share/doc/EMBOSS/programs/html/dreg.html
share/doc/EMBOSS/programs/html/edialign.html
share/doc/EMBOSS/programs/html/edit_group.html
share/doc/EMBOSS/programs/html/einverted.html
share/doc/EMBOSS/programs/html/emboss_icon.gif
share/doc/EMBOSS/programs/html/emboss_icon.jpg
share/doc/EMBOSS/programs/html/embossdata.html
share/doc/EMBOSS/programs/html/embossversion.html
share/doc/EMBOSS/programs/html/emma.html
share/doc/EMBOSS/programs/html/emowse.html
share/doc/EMBOSS/programs/html/entret.html
share/doc/EMBOSS/programs/html/enzyme_kinetics_group.html
share/doc/EMBOSS/programs/html/epestfind.1.epestfind.gif
share/doc/EMBOSS/programs/html/epestfind.html
share/doc/EMBOSS/programs/html/eprimer3.html
share/doc/EMBOSS/programs/html/equicktandem.html
share/doc/EMBOSS/programs/html/est2genome.html
share/doc/EMBOSS/programs/html/etandem.html
share/doc/EMBOSS/programs/html/extractalign.html
share/doc/EMBOSS/programs/html/extractfeat.html
share/doc/EMBOSS/programs/html/extractseq.html
share/doc/EMBOSS/programs/html/featcopy.html
share/doc/EMBOSS/programs/html/featreport.html
share/doc/EMBOSS/programs/html/feature_tables_group.html
share/doc/EMBOSS/programs/html/findkm.1.findkm.gif
share/doc/EMBOSS/programs/html/findkm.html
share/doc/EMBOSS/programs/html/freak.html
share/doc/EMBOSS/programs/html/fuzznuc.html
share/doc/EMBOSS/programs/html/fuzzpro.html
share/doc/EMBOSS/programs/html/fuzztran.html
share/doc/EMBOSS/programs/html/garnier.html
share/doc/EMBOSS/programs/html/geecee.html
share/doc/EMBOSS/programs/html/getorf.html
share/doc/EMBOSS/programs/html/groups.html
share/doc/EMBOSS/programs/html/helixturnhelix.html
share/doc/EMBOSS/programs/html/hmm_group.html
share/doc/EMBOSS/programs/html/hmoment.html
share/doc/EMBOSS/programs/html/iep.html
share/doc/EMBOSS/programs/html/index.html
share/doc/EMBOSS/programs/html/infoalign.html
share/doc/EMBOSS/programs/html/infobase.html
share/doc/EMBOSS/programs/html/inforesidue.html
share/doc/EMBOSS/programs/html/information_group.html
share/doc/EMBOSS/programs/html/infoseq.html
share/doc/EMBOSS/programs/html/isochore.1.isochore.gif
share/doc/EMBOSS/programs/html/isochore.html
share/doc/EMBOSS/programs/html/jaspextract.html
share/doc/EMBOSS/programs/html/jaspscan.html
share/doc/EMBOSS/programs/html/jembossctl.html
share/doc/EMBOSS/programs/html/libscan.html
share/doc/EMBOSS/programs/html/lindna.1.lindna.gif
share/doc/EMBOSS/programs/html/lindna.html
share/doc/EMBOSS/programs/html/listor.html
share/doc/EMBOSS/programs/html/makenucseq.html
share/doc/EMBOSS/programs/html/makeprotseq.html
share/doc/EMBOSS/programs/html/marscan.html
share/doc/EMBOSS/programs/html/maskambignuc.html
share/doc/EMBOSS/programs/html/maskambigprot.html
share/doc/EMBOSS/programs/html/maskfeat.html
share/doc/EMBOSS/programs/html/maskseq.html
share/doc/EMBOSS/programs/html/matcher.html
share/doc/EMBOSS/programs/html/megamerger.html
share/doc/EMBOSS/programs/html/menus_group.html
share/doc/EMBOSS/programs/html/merger.html
share/doc/EMBOSS/programs/html/msbar.html
share/doc/EMBOSS/programs/html/mwcontam.html
share/doc/EMBOSS/programs/html/mwfilter.html
share/doc/EMBOSS/programs/html/needle.html
share/doc/EMBOSS/programs/html/newcpgreport.html
share/doc/EMBOSS/programs/html/newcpgseek.html
share/doc/EMBOSS/programs/html/newseq.html
share/doc/EMBOSS/programs/html/nohtml.html
share/doc/EMBOSS/programs/html/noreturn.html
share/doc/EMBOSS/programs/html/nospace.html
share/doc/EMBOSS/programs/html/notab.html
share/doc/EMBOSS/programs/html/notseq.html
share/doc/EMBOSS/programs/html/nthseq.html
share/doc/EMBOSS/programs/html/nucleic_2d_structure_group.html
share/doc/EMBOSS/programs/html/nucleic_codon_usage_group.html
share/doc/EMBOSS/programs/html/nucleic_codon_usage_nucleic_gene_finding_group.html
share/doc/EMBOSS/programs/html/nucleic_composition_group.html
share/doc/EMBOSS/programs/html/nucleic_cpg_islands_group.html
share/doc/EMBOSS/programs/html/nucleic_gene_finding_group.html
share/doc/EMBOSS/programs/html/nucleic_motifs_group.html
share/doc/EMBOSS/programs/html/nucleic_mutation_group.html
share/doc/EMBOSS/programs/html/nucleic_primers_group.html
share/doc/EMBOSS/programs/html/nucleic_profiles_group.html
share/doc/EMBOSS/programs/html/nucleic_repeats_group.html
share/doc/EMBOSS/programs/html/nucleic_restriction_group.html
share/doc/EMBOSS/programs/html/nucleic_rna_folding_group.html
share/doc/EMBOSS/programs/html/nucleic_transcription_group.html
share/doc/EMBOSS/programs/html/nucleic_translation_group.html
share/doc/EMBOSS/programs/html/octanol.1.octanol.gif
share/doc/EMBOSS/programs/html/octanol.html
share/doc/EMBOSS/programs/html/oddcomp.html
share/doc/EMBOSS/programs/html/palindrome.html
share/doc/EMBOSS/programs/html/pasteseq.html
share/doc/EMBOSS/programs/html/patmatdb.html
share/doc/EMBOSS/programs/html/patmatmotifs.html
share/doc/EMBOSS/programs/html/pepcoil.html
share/doc/EMBOSS/programs/html/pepinfo.1.pepinfo.gif
share/doc/EMBOSS/programs/html/pepinfo.html
share/doc/EMBOSS/programs/html/pepnet.1.pepnet.gif
share/doc/EMBOSS/programs/html/pepnet.html
share/doc/EMBOSS/programs/html/pepstats.html
share/doc/EMBOSS/programs/html/pepwheel.1.pepwheel.gif
share/doc/EMBOSS/programs/html/pepwheel.html
share/doc/EMBOSS/programs/html/pepwindow.1.pepwindow.gif
share/doc/EMBOSS/programs/html/pepwindow.html
share/doc/EMBOSS/programs/html/pepwindowall.1.pepwindowall.gif
share/doc/EMBOSS/programs/html/pepwindowall.html
share/doc/EMBOSS/programs/html/phylogeny_consensus_group.html
share/doc/EMBOSS/programs/html/phylogeny_continuous_characters_group.html
share/doc/EMBOSS/programs/html/phylogeny_discrete_characters_group.html
share/doc/EMBOSS/programs/html/phylogeny_distance_matrix_group.html
share/doc/EMBOSS/programs/html/phylogeny_gene_frequencies_group.html
share/doc/EMBOSS/programs/html/phylogeny_group.html
share/doc/EMBOSS/programs/html/phylogeny_molecular_sequence_group.html
share/doc/EMBOSS/programs/html/phylogeny_tree_drawing_group.html
share/doc/EMBOSS/programs/html/plotcon.1.plotcon.gif
share/doc/EMBOSS/programs/html/plotcon.html
share/doc/EMBOSS/programs/html/plotorf.1.plotorf.gif
share/doc/EMBOSS/programs/html/plotorf.2.plotorf.gif
share/doc/EMBOSS/programs/html/plotorf.html
share/doc/EMBOSS/programs/html/polydot.1.polydot.gif
share/doc/EMBOSS/programs/html/polydot.html
share/doc/EMBOSS/programs/html/preg.html
share/doc/EMBOSS/programs/html/prettyplot.1.prettyplot.gif
share/doc/EMBOSS/programs/html/prettyplot.2.prettyplot.gif
share/doc/EMBOSS/programs/html/prettyplot.html
share/doc/EMBOSS/programs/html/prettyseq.html
share/doc/EMBOSS/programs/html/primersearch.html
share/doc/EMBOSS/programs/html/printsextract.html
share/doc/EMBOSS/programs/html/profit.html
share/doc/EMBOSS/programs/html/prophecy.html
share/doc/EMBOSS/programs/html/prophet.html
share/doc/EMBOSS/programs/html/prosextract.html
share/doc/EMBOSS/programs/html/protein_2d_structure_group.html
share/doc/EMBOSS/programs/html/protein_3d_structure_group.html
share/doc/EMBOSS/programs/html/protein_composition_group.html
share/doc/EMBOSS/programs/html/protein_motifs_group.html
share/doc/EMBOSS/programs/html/protein_mutation_group.html
share/doc/EMBOSS/programs/html/protein_profiles_group.html
share/doc/EMBOSS/programs/html/protein_sequence_alignment_group.html
share/doc/EMBOSS/programs/html/pscan.html
share/doc/EMBOSS/programs/html/psiphi.html
share/doc/EMBOSS/programs/html/rebaseextract.html
share/doc/EMBOSS/programs/html/recoder.html
share/doc/EMBOSS/programs/html/redata.html
share/doc/EMBOSS/programs/html/remap.html
share/doc/EMBOSS/programs/html/restover.html
share/doc/EMBOSS/programs/html/restrict.html
share/doc/EMBOSS/programs/html/revseq.html
share/doc/EMBOSS/programs/html/seealso.html
share/doc/EMBOSS/programs/html/seqmatchall.html
share/doc/EMBOSS/programs/html/seqret.html
share/doc/EMBOSS/programs/html/seqretsplit.html
share/doc/EMBOSS/programs/html/showalign.html
share/doc/EMBOSS/programs/html/showdb.html
share/doc/EMBOSS/programs/html/showfeat.html
share/doc/EMBOSS/programs/html/showorf.html
share/doc/EMBOSS/programs/html/showseq.html
share/doc/EMBOSS/programs/html/shuffleseq.html
share/doc/EMBOSS/programs/html/sigcleave.html
share/doc/EMBOSS/programs/html/silent.html
share/doc/EMBOSS/programs/html/sirna.html
share/doc/EMBOSS/programs/html/sixpack.html
share/doc/EMBOSS/programs/html/sizeseq.html
share/doc/EMBOSS/programs/html/skipredundant.html
share/doc/EMBOSS/programs/html/skipseq.html
share/doc/EMBOSS/programs/html/splitter.html
share/doc/EMBOSS/programs/html/stretcher.html
share/doc/EMBOSS/programs/html/stssearch.html
share/doc/EMBOSS/programs/html/supermatcher.html
share/doc/EMBOSS/programs/html/syco.1.syco.gif
share/doc/EMBOSS/programs/html/syco.html
share/doc/EMBOSS/programs/html/tcode.2.tcode.gif
share/doc/EMBOSS/programs/html/tcode.html
share/doc/EMBOSS/programs/html/template.html
share/doc/EMBOSS/programs/html/test_group.html
share/doc/EMBOSS/programs/html/textsearch.html
share/doc/EMBOSS/programs/html/tfextract.html
share/doc/EMBOSS/programs/html/tfm.html
share/doc/EMBOSS/programs/html/tfscan.html
share/doc/EMBOSS/programs/html/tmap.1.tmap.gif
share/doc/EMBOSS/programs/html/tmap.html
share/doc/EMBOSS/programs/html/tranalign.html
share/doc/EMBOSS/programs/html/transeq.html
share/doc/EMBOSS/programs/html/trimest.html
share/doc/EMBOSS/programs/html/trimseq.html
share/doc/EMBOSS/programs/html/trimspace.html
share/doc/EMBOSS/programs/html/twofeat.html
share/doc/EMBOSS/programs/html/union.html
share/doc/EMBOSS/programs/html/utils_database_creation_group.html
share/doc/EMBOSS/programs/html/utils_database_indexing_group.html
share/doc/EMBOSS/programs/html/utils_misc_group.html
share/doc/EMBOSS/programs/html/vectorstrip.html
share/doc/EMBOSS/programs/html/water.html
share/doc/EMBOSS/programs/html/whichdb.html
share/doc/EMBOSS/programs/html/wobble.1.wobble.gif
share/doc/EMBOSS/programs/html/wobble.html
share/doc/EMBOSS/programs/html/wordcount.html
share/doc/EMBOSS/programs/html/wordfinder.html
share/doc/EMBOSS/programs/html/wordmatch.html
share/doc/EMBOSS/programs/html/wossname.html
share/doc/EMBOSS/programs/html/yank.html
share/doc/EMBOSS/programs/text/
share/doc/EMBOSS/programs/text/SITE-DIRECTED.txt
share/doc/EMBOSS/programs/text/aaindexextract.txt
share/doc/EMBOSS/programs/text/abiview.txt
share/doc/EMBOSS/programs/text/acdc.txt
share/doc/EMBOSS/programs/text/acdlog.txt
share/doc/EMBOSS/programs/text/acdpretty.txt
share/doc/EMBOSS/programs/text/acdtable.txt
share/doc/EMBOSS/programs/text/acdtrace.txt
share/doc/EMBOSS/programs/text/acdvalid.txt
share/doc/EMBOSS/programs/text/aligncopy.txt
share/doc/EMBOSS/programs/text/aligncopypair.txt
share/doc/EMBOSS/programs/text/antigenic.txt
share/doc/EMBOSS/programs/text/backtranambig.txt
share/doc/EMBOSS/programs/text/backtranseq.txt
share/doc/EMBOSS/programs/text/banana.txt
share/doc/EMBOSS/programs/text/biosed.txt
share/doc/EMBOSS/programs/text/btwisted.txt
share/doc/EMBOSS/programs/text/cai.txt
share/doc/EMBOSS/programs/text/chaos.txt
share/doc/EMBOSS/programs/text/charge.txt
share/doc/EMBOSS/programs/text/checktrans.txt
share/doc/EMBOSS/programs/text/chips.txt
share/doc/EMBOSS/programs/text/cirdna.txt
share/doc/EMBOSS/programs/text/codcmp.txt
share/doc/EMBOSS/programs/text/codcopy.txt
share/doc/EMBOSS/programs/text/coderet.txt
share/doc/EMBOSS/programs/text/complex.txt
share/doc/EMBOSS/programs/text/compseq.txt
share/doc/EMBOSS/programs/text/cons.txt
share/doc/EMBOSS/programs/text/consambig.txt
share/doc/EMBOSS/programs/text/cpgplot.txt
share/doc/EMBOSS/programs/text/cpgreport.txt
share/doc/EMBOSS/programs/text/cusp.txt
share/doc/EMBOSS/programs/text/cutgextract.txt
share/doc/EMBOSS/programs/text/cutseq.txt
share/doc/EMBOSS/programs/text/dan.txt
share/doc/EMBOSS/programs/text/dbiblast.txt
share/doc/EMBOSS/programs/text/dbifasta.txt
share/doc/EMBOSS/programs/text/dbiflat.txt
share/doc/EMBOSS/programs/text/dbigcg.txt
share/doc/EMBOSS/programs/text/dbxfasta.txt
share/doc/EMBOSS/programs/text/dbxflat.txt
share/doc/EMBOSS/programs/text/dbxgcg.txt
share/doc/EMBOSS/programs/text/degapseq.txt
share/doc/EMBOSS/programs/text/density.txt
share/doc/EMBOSS/programs/text/descseq.txt
share/doc/EMBOSS/programs/text/diffseq.txt
share/doc/EMBOSS/programs/text/digest.txt
share/doc/EMBOSS/programs/text/distmat.txt
share/doc/EMBOSS/programs/text/dotmatcher.txt
share/doc/EMBOSS/programs/text/dotpath.txt
share/doc/EMBOSS/programs/text/dottup.txt
share/doc/EMBOSS/programs/text/dreg.txt
share/doc/EMBOSS/programs/text/edialign.txt
share/doc/EMBOSS/programs/text/einverted.txt
share/doc/EMBOSS/programs/text/embossdata.txt
share/doc/EMBOSS/programs/text/embossversion.txt
share/doc/EMBOSS/programs/text/emma.txt
share/doc/EMBOSS/programs/text/emowse.txt
share/doc/EMBOSS/programs/text/entret.txt
share/doc/EMBOSS/programs/text/epestfind.txt
share/doc/EMBOSS/programs/text/eprimer3.txt
share/doc/EMBOSS/programs/text/equicktandem.txt
share/doc/EMBOSS/programs/text/est2genome.txt
share/doc/EMBOSS/programs/text/etandem.txt
share/doc/EMBOSS/programs/text/extractalign.txt
share/doc/EMBOSS/programs/text/extractfeat.txt
share/doc/EMBOSS/programs/text/extractseq.txt
share/doc/EMBOSS/programs/text/featcopy.txt
share/doc/EMBOSS/programs/text/featreport.txt
share/doc/EMBOSS/programs/text/findkm.txt
share/doc/EMBOSS/programs/text/freak.txt
share/doc/EMBOSS/programs/text/frestdist.txt
share/doc/EMBOSS/programs/text/fuzznuc.txt
share/doc/EMBOSS/programs/text/fuzzpro.txt
share/doc/EMBOSS/programs/text/fuzztran.txt
share/doc/EMBOSS/programs/text/garnier.txt
share/doc/EMBOSS/programs/text/geecee.txt
share/doc/EMBOSS/programs/text/getorf.txt
share/doc/EMBOSS/programs/text/helixturnhelix.txt
share/doc/EMBOSS/programs/text/hmoment.txt
share/doc/EMBOSS/programs/text/iep.txt
share/doc/EMBOSS/programs/text/infoalign.txt
share/doc/EMBOSS/programs/text/infobase.txt
share/doc/EMBOSS/programs/text/inforesidue.txt
share/doc/EMBOSS/programs/text/infoseq.txt
share/doc/EMBOSS/programs/text/isochore.txt
share/doc/EMBOSS/programs/text/jaspextract.txt
share/doc/EMBOSS/programs/text/jaspscan.txt
share/doc/EMBOSS/programs/text/jembossctl.txt
share/doc/EMBOSS/programs/text/lindna.txt
share/doc/EMBOSS/programs/text/listor.txt
share/doc/EMBOSS/programs/text/makenucseq.txt
share/doc/EMBOSS/programs/text/makeprotseq.txt
share/doc/EMBOSS/programs/text/marscan.txt
share/doc/EMBOSS/programs/text/maskambignuc.txt
share/doc/EMBOSS/programs/text/maskambigprot.txt
share/doc/EMBOSS/programs/text/maskfeat.txt
share/doc/EMBOSS/programs/text/maskseq.txt
share/doc/EMBOSS/programs/text/matcher.txt
share/doc/EMBOSS/programs/text/megamerger.txt
share/doc/EMBOSS/programs/text/merger.txt
share/doc/EMBOSS/programs/text/msbar.txt
share/doc/EMBOSS/programs/text/mwcontam.txt
share/doc/EMBOSS/programs/text/mwfilter.txt
share/doc/EMBOSS/programs/text/needle.txt
share/doc/EMBOSS/programs/text/newcpgreport.txt
share/doc/EMBOSS/programs/text/newcpgseek.txt
share/doc/EMBOSS/programs/text/newseq.txt
share/doc/EMBOSS/programs/text/nohtml.txt
share/doc/EMBOSS/programs/text/noreturn.txt
share/doc/EMBOSS/programs/text/nospace.txt
share/doc/EMBOSS/programs/text/notab.txt
share/doc/EMBOSS/programs/text/notseq.txt
share/doc/EMBOSS/programs/text/nthseq.txt
share/doc/EMBOSS/programs/text/octanol.txt
share/doc/EMBOSS/programs/text/oddcomp.txt
share/doc/EMBOSS/programs/text/palindrome.txt
share/doc/EMBOSS/programs/text/pasteseq.txt
share/doc/EMBOSS/programs/text/patmatdb.txt
share/doc/EMBOSS/programs/text/patmatmotifs.txt
share/doc/EMBOSS/programs/text/pepcoil.txt
share/doc/EMBOSS/programs/text/pepinfo.txt
share/doc/EMBOSS/programs/text/pepnet.txt
share/doc/EMBOSS/programs/text/pepstats.txt
share/doc/EMBOSS/programs/text/pepwheel.txt
share/doc/EMBOSS/programs/text/pepwindow.txt
share/doc/EMBOSS/programs/text/pepwindowall.txt
share/doc/EMBOSS/programs/text/plotcon.txt
share/doc/EMBOSS/programs/text/plotorf.txt
share/doc/EMBOSS/programs/text/polydot.txt
share/doc/EMBOSS/programs/text/preg.txt
share/doc/EMBOSS/programs/text/prettyplot.txt
share/doc/EMBOSS/programs/text/prettyseq.txt
share/doc/EMBOSS/programs/text/primersearch.txt
share/doc/EMBOSS/programs/text/printsextract.txt
share/doc/EMBOSS/programs/text/profit.txt
share/doc/EMBOSS/programs/text/prophecy.txt
share/doc/EMBOSS/programs/text/prophet.txt
share/doc/EMBOSS/programs/text/prosextract.txt
share/doc/EMBOSS/programs/text/pscan.txt
share/doc/EMBOSS/programs/text/psiphi.txt
share/doc/EMBOSS/programs/text/rebaseextract.txt
share/doc/EMBOSS/programs/text/recoder.txt
share/doc/EMBOSS/programs/text/redata.txt
share/doc/EMBOSS/programs/text/remap.txt
share/doc/EMBOSS/programs/text/restover.txt
share/doc/EMBOSS/programs/text/restrict.txt
share/doc/EMBOSS/programs/text/revseq.txt
share/doc/EMBOSS/programs/text/seealso.txt
share/doc/EMBOSS/programs/text/seqmatchall.txt
share/doc/EMBOSS/programs/text/seqret.txt
share/doc/EMBOSS/programs/text/seqretsplit.txt
share/doc/EMBOSS/programs/text/showalign.txt
share/doc/EMBOSS/programs/text/showdb.txt
share/doc/EMBOSS/programs/text/showfeat.txt
share/doc/EMBOSS/programs/text/showorf.txt
share/doc/EMBOSS/programs/text/showseq.txt
share/doc/EMBOSS/programs/text/shuffleseq.txt
share/doc/EMBOSS/programs/text/sigcleave.txt
share/doc/EMBOSS/programs/text/silent.txt
share/doc/EMBOSS/programs/text/sirna.txt
share/doc/EMBOSS/programs/text/sixpack.txt
share/doc/EMBOSS/programs/text/sizeseq.txt
share/doc/EMBOSS/programs/text/skipredundant.txt
share/doc/EMBOSS/programs/text/skipseq.txt
share/doc/EMBOSS/programs/text/splitter.txt
share/doc/EMBOSS/programs/text/stretcher.txt
share/doc/EMBOSS/programs/text/stssearch.txt
share/doc/EMBOSS/programs/text/supermatcher.txt
share/doc/EMBOSS/programs/text/syco.txt
share/doc/EMBOSS/programs/text/tcode.txt
share/doc/EMBOSS/programs/text/textsearch.txt
share/doc/EMBOSS/programs/text/tfextract.txt
share/doc/EMBOSS/programs/text/tfm.txt
share/doc/EMBOSS/programs/text/tfscan.txt
share/doc/EMBOSS/programs/text/tmap.txt
share/doc/EMBOSS/programs/text/tranalign.txt
share/doc/EMBOSS/programs/text/transeq.txt
share/doc/EMBOSS/programs/text/trimest.txt
share/doc/EMBOSS/programs/text/trimseq.txt
share/doc/EMBOSS/programs/text/trimspace.txt
share/doc/EMBOSS/programs/text/twofeat.txt
share/doc/EMBOSS/programs/text/union.txt
share/doc/EMBOSS/programs/text/vectorstrip.txt
share/doc/EMBOSS/programs/text/water.txt
share/doc/EMBOSS/programs/text/whichdb.txt
share/doc/EMBOSS/programs/text/wobble.txt
share/doc/EMBOSS/programs/text/wordcount.txt
share/doc/EMBOSS/programs/text/wordfinder.txt
share/doc/EMBOSS/programs/text/wordmatch.txt
share/doc/EMBOSS/programs/text/wossname.txt
share/doc/EMBOSS/programs/text/yank.txt
share/doc/EMBOSS/tutorials/
share/doc/EMBOSS/tutorials/emboss-gcg.ppt
share/doc/EMBOSS/tutorials/emboss-interfaces.ppt
share/doc/EMBOSS/tutorials/emboss-talk.ppt
share/doc/EMBOSS/tutorials/emboss_tut.tar.gz
